DreEX0087603 @ danRer10
Exon Skipping
Gene
ENSDARG00000071139 | zgc:64065
Description
zgc:64065 [Source:ZFIN;Acc:ZDB-GENE-040426-1355]
Coordinates
chr6:8912147-8914837:+
Coord C1 exon
chr6:8912147-8912308
Coord A exon
chr6:8912433-8912604
Coord C2 exon
chr6:8914158-8914837
Length
172 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCCCTTTTTATAAAGCCT
3' ss Score
5.64
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGGCAATGACTGAACTGAAGACATGGTTAGGACAGCACTCTAAGGAGGTCGTCATCCTTGCTTTCTCACATTTCAAGGAAATGTCAGCCGATCAACACACAGACCTGACCAACTTCCTCAAAGAGCACTTCAAAACCAAACTCTGTCCTAAGGCTAAAATG
Seq A exon
CCTTCACTGAAGGACTGCTGGGAAAGTAGCTATCAGGTTATCCTCTCTTATGATGACAGAAATATTGAGGATCCTGTTTTGTGGCCTCGAATCGGGTACTGGTGGGCTGATAATTCAGACCCCAATGAGGTCATTTCATTCCTCGATAACAAGAAACAGACAGGCAGACCAG
Seq C2 exon
AGGGATTGTTTGTTGCTGGTCTCAACCTGACTTTTGATGCGAATGACATGCTCCAGTACCTCACAACATCATTAAAGGAGAAGACCATGACGGCTTACCCTCTGTTGCTGGAATGGGTGAAGGAGCAACACCCAGGCTCGGGCACACAAAGCATCAACATCATCGCTGGAGATTTTGTTGGCGTGAACAGCTTTGCTCACGATGTCATTCAGCTCAACAATGCCAAAAACTAGTTCTTGAAGATCTAGTGCAGGGGTCACCAATCTCGGTCCTGGAGGGCTGGTGTCCCTGCAGGGTTTAGCTCCAACTTGCCTCAACACACCTGCCTGGATGATTCAAGTATACCTAGTAAGACCTTGATTAGCTTGTTCAGGTGTGTTTGATTAGGGTTGGAGCTAAAATCCAGTTTGGTGACCACTGATCTAGTGGTAGATACTGTTACATTTCGTGAATGAAAGAAAGAATATATATTGTAGTCTGTTAAATGGGGGTGCAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071139_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.052 C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=FE(31.9=100)
A:
PF0038814=PI-PLC-X=PD(9.0=25.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCACTCTAAGGAGGTCGT
R:
CCTTCACCCATTCCAGCAACA
Band lengths:
253-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]