DreEX0087627 @ danRer10
Exon Skipping
Gene
ENSDARG00000068840 | zgc:66024
Description
zgc:66024 [Source:ZFIN;Acc:ZDB-GENE-040426-1511]
Coordinates
chr15:35085177-35086097:+
Coord C1 exon
chr15:35085177-35085261
Coord A exon
chr15:35085587-35085641
Coord C2 exon
chr15:35085789-35086097
Length
55 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGTGTGTGTTCACAGTAT
3' ss Score
9.17
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
CGTGGCGCAAAAATTTTCTGCGCATAAAGACCATGGTGTTGCTCGGCGGACCAGATGATGGCACTATTAAACCATGGCAATCAAG
Seq A exon
TATGTTTGGGTTTTACAACCGCAATGAAAAGGTGATTGATATGGAACATCAAGAT
Seq C2 exon
TATTATATTAGTGATTCCTTTGGCCTAAAAACACTGAACCGACGAAAAGCCATTGTGAAGTGTATCATCCCTGATGTTCACCATGATGCCTGGCCGACAGACTACAAAATCTACAAGAAATGCATAGAAAAGTGGCTCACGTAATCTACAGAAGGAAAACAAAAAACATTTTCCTTCACAAGCAAAAGAACAATCCTAAATGCAATCATGTTCTGATTTAGATTATGATTGTACTCTTATTGATCCATCAGATTGTTTGTCAGAATGTAAGATTCCTTTACACCTGGTAATAAATTGATTGTGAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068840-'8-10,'8-9,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=FE(11.1=100)
A:
PF0208910=Palm_thioest=FE(7.1=100)
C2:
PF0208910=Palm_thioest=PD(11.5=60.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCGCAAAAATTTTCTGCG
R:
TCACAATGGCTTTTCGTCGGT
Band lengths:
142-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]