DreEX0087964 @ danRer10
Exon Skipping
Gene
ENSDARG00000035823 | zmym4
Description
zinc finger, MYM-type 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5459]
Coordinates
chr19:40515243-40519925:+
Coord C1 exon
chr19:40515243-40515340
Coord A exon
chr19:40517712-40518353
Coord C2 exon
chr19:40519772-40519925
Length
642 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTATGCTCCACCAAGGCT
3' ss Score
2.58
5' ss Seq
ACGGTTGGC
5' ss Score
2.85
Exon sequences
Seq C1 exon
AGAGCATTGAACTCTTCAGAGAACAAACGCCAAATAAGACAACAGGCAAACGGAAATCTCGCAAGAGAGCACGCGATGGCTTTCCTCAGAAGAAACGG
Seq A exon
GCTGTTTCATCCGCATGCACATTTATGTCAGTGAAGTCAAGTCTTGATGTCGGCAGTGCTGGTCTGCAGGCACAGAAAACGCCGGGATCCTCAAGTCATAGGCTGATAAGACGAGACGCAGTGATTACTGGACTGAGGAGGGAGCTGCACCACTGCAAGGAGGTTTATGAGACCACCAAAGCAGCTCTGACCGATCTGAAAAGCTCTCATAAGGGGCTCGTGGAGGCACACATGGCTGTGGTTCTGCAACTGAGAGATGCACTGGACAAAAAACAACCACTACGGACCCAGCGTCATAGTTCATGCAGTCAAGATGATATGATGCAAACAAAGTCCTGCCATCCCAATTTCGACTTTCATCCTCCCTCAAAGCAGCAGTTGAACGCCCTGTTTAATCAGAGTCAGAAGCGTGCGGATCGTTACGGATGCCTGCTATTTCGTGTCATTGTACCTCAAACCAAGTATAAAGAATGGGCGTCCAATACCAACTGGGATGGCTCAAGGGGTAAATGCGCATTGCCGGTAAACCTGCGGAGCTTCATCATTGATACGGTTTCTCAGAGATTCCCCGGCTTGAGTGATGTTGACCGGAAATGCATTAAAGACAGAATCAATGAGTTCTTGCGCTCGCCAAGAAACACG
Seq C2 exon
GCTCGTAAGACTGCAGCAGAGCTTCCAGCCAAATCAGCTCCAGAAAACCTCTCTAACATCTCTAAACTACAACACGAGTACGGAGTCACCGCCTGGAGGGACTGGGTGCGCTGGAGGAACGCTCAGCCCAACATGGAGACTCCCAAATTTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035823_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.848 A=0.262 C2=0.269
Domain overlap (PFAM):
C1:
NO
A:
PF105234=BEN=PU(97.4=35.0)
C2:
PF105234=BEN=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCATTGAACTCTTCAGAGAACA
R:
ATTTGGGAGTCTCCATGTTGGG
Band lengths:
246-888
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]