DreEX0088016 @ danRer10
Exon Skipping
Gene
ENSDARG00000055106 | znf148
Description
zinc finger protein 148 [Source:ZFIN;Acc:ZDB-GENE-030131-8769]
Coordinates
chr9:38814683-38820614:+
Coord C1 exon
chr9:38814683-38814852
Coord A exon
chr9:38816125-38816164
Coord C2 exon
chr9:38820167-38820614
Length
40 bp
Sequences
Splice sites
3' ss Seq
TTTTCATATACTTTCCCTAGCGG
3' ss Score
7.52
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAGTCTCGTTTGAGCGGGTCCGCTGCGATCCCAGAATGCATCACTGCGCAGCTGCAGATGGAATGTAGCTCGCTAGCCTCGTATGCTAGCCGCAGCACCACAGTAAAGTTTGACAAACACGTCATGAGCGGCTCGAACCCGCAGCCAGCGTCGCACTGACGACACATGCG
Seq A exon
CGGCCCGTGTGTGGAGTCACCATGACCCCATTCTGTTAAG
Seq C2 exon
GTTGACGTTGGAAAGGTGCCGTGTTGACTGCTGATTGGAATCCCTATGTTGGTTCTGTAACTTCAGCACAACTGCTCAGCGTTCAGCGATGAACATTGATGACAAGCTGGAGGGCATGCTTTTGAAATATAGCCCTGTGGGGCTTCAACACCCTTCCAGAGGTTTGGGACCCTCGAGGGTGGATGGAAGAGGAAGAAGAGGCAGTTTGGATATGACTCTTGGGGAGCGCAGCTTGGCGAATCATCCACTTTTGGCAGAGGATGATGATGACGAGGATGAGGAGGAGGATGATGACGATGACCTGGCAGGTGAAGGCCTGACCTCACATGACCTGATATCTCAGGATGACCTGATGGTGCATGAGGAGACGGTCAAAAATGATGGACAGGATGAAGCAGCTTTCTCACATCGAATCTCCAATAAATTACACTATACACTCAGTATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055106-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.842
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGATGGAATGTAGCTCGC
R:
TCAACACGGCACCTTTCCAAC
Band lengths:
145-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]