DreEX0088227 @ danRer10
Exon Skipping
Gene
ENSDARG00000052188 | znf541
Description
zinc finger protein 541 [Source:ZFIN;Acc:ZDB-GENE-060526-239]
Coordinates
chr5:61284562-61290380:-
Coord C1 exon
chr5:61290289-61290380
Coord A exon
chr5:61289656-61289721
Coord C2 exon
chr5:61284562-61289116
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTCTTAACTGTGTTATTCAGACA
3' ss Score
5.26
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTCTTCAAATGCTCCCAAGAGCTCCAGTCTGAGCAAACAGACAGAAACACAAAACAGAGGACAAAAGCCACTGAGGGCGAGATGAGTGCCAG
Seq A exon
ACAAACACACACCGGTACACCCCCAACATCCCAGTCTCCAAAAATTTCAGAGACAAATGTTGGCAG
Seq C2 exon
AGCTGAGAAGGGTCACAGATCTCCCTCAGTCAGGATAGATACAAACTCCAGATGGTGGTGGGCAAGAAAGGACACCAGTCCGAGCAGTAGTCTGAAGTCAACTCAAGTCTCTTCAGTATTTGAGCAGAATCCTGTGTGAAGTGCATTTAAGACTACAGTAATGTTCAAATCATTATCCAGATACTTTCCTTCACACTGAATACAAAAAGCAGCCAAGTTTTAATTCATTTTTACAACCGTTTATTTGTTCTGACAGATTTTGAGAAGTTAACACTTTGAAATATTAATGTTAGGGAGTTAGGGTTGTCATGATACTGGAATTTGGTACCAATCGATACTGGAATTTTAAAAACGTCCATTTCCTGCTAAGATTTGAACGCTATTGAGCATGTTCCTAAAAACCGTTGATTTGCCACTGTGTTCACATGCTCAACAAAAAGGACTTTGATTGGCTGTTGAGGTCATCAGTTCACCAAACACACCACTGTTTATTGAGTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052188_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAAGAGCTCCAGTCTGAG
R:
TCAGACTACTGCTCGGACTGG
Band lengths:
175-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]