DreEX6000677 @ danRer10
Exon Skipping
Gene
ENSDARG00000045837 | SSC5D (2 of 2)
Description
scavenger receptor cysteine rich family, 5 domains [Source:HGNC Symbol;Acc:HGNC:26641]
Coordinates
chr4:5387852-5390652:+
Coord C1 exon
chr4:5387852-5388157
Coord A exon
chr4:5389568-5389870
Coord C2 exon
chr4:5390344-5390652
Length
303 bp
Sequences
Splice sites
3' ss Seq
TAACTCTCTAATCTTTCTAGCAA
3' ss Score
6.38
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
TTCTTGTTAGGCTAGTAAATGGCCCTAACTCCTGCTCAGGACGAGTGGAGGTTTTCTTCGATGGCCAATGGGGAACGGTGTGTGATGATAACTGGGATCAGTCAGACGCTGCATCGGTGTGTTCTGAACTGGGCTGTGGAAGTGTTATAGAGGCAAAAAGCGCTGCTTATTTTGGACAGGGATCTGGTCCAGTATGGCTTAGTGGTGTAAAATGTGCCACTGGCTCGACTCTGAGAAACTGTGATTCACAAGGATGGGGACAAAACAGCTGTGGACATGAGAGGGATGCTGGAGTCACCTGTCAGC
Seq A exon
CAAAAATGAGACTGGCGAGTGGTGACGGCTCCTGTTCTGGACGAGTGGAGGTTTTCCTCCACAGCCAGTGGGCAACAGTGTATGATGATGGCTGGGATCTGTCAGATGCTGCAGTGGTGTGTAGAGAGATGGGCTGTGGAGATGCTGCACAGGCAAAGAGTAATGCTTATTTCGGACAAGGAACTGGACAAACATACATGTCCAATGTAAACTGTGTTGGAAATGAGTCCTCACTGAGTGTCTGTGAATCACTTAAGCCGAAAAGTACTGACCATTCGAAGGACGCTGGGGTCATCTGCGACT
Seq C2 exon
CTCCTGTCAGGCTCATTAATGGAAATAACTCGTGTTCTGGACGAGTGGAGGTTTTCTATAGTGGTCAGTGGGGAACAGTGTGTGGTGATGGCTGGGATCTGACAGATGCTGCAGTGCTGTGTAAAGATCTGGGATGTGGAGATGCCATTGAGGTCAAAAATGATAATTATTTTGGCCAGGGATCGGGGCCGGTATGGCTAAGTAATCTGCAGTGCTCTAGTACTGATACAAGGCTGCGAGACTGTAAATCAAGCGGATGGAGGATTGATAGCTGCGGACATGAGAACGATGCAGGAGTTATCTGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045837-'5-7,'5-6,6-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(1.2=1.0),PF0053013=SRCR=WD(100=94.2)
A:
PF0053013=SRCR=WD(100=94.1)
C2:
PF0053013=SRCR=WD(100=94.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGGGAACGGTGTGTGATG
R:
GCACTGCAGCATCTGTCAGAT
Band lengths:
357-660
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]