DreEX6001386 @ danRer10
Exon Skipping
Gene
ENSDARG00000095981 | si:ch211-161n3.5
Description
si:ch211-161n3.5 [Source:ZFIN;Acc:ZDB-GENE-110913-81]
Coordinates
chr4:10929609-10930388:-
Coord C1 exon
chr4:10930317-10930388
Coord A exon
chr4:10929917-10930231
Coord C2 exon
chr4:10929609-10929827
Length
315 bp
Sequences
Splice sites
3' ss Seq
CAATTATGTGTGTGTTTCAGCAC
3' ss Score
8.69
5' ss Seq
CAGGTCACT
5' ss Score
3.41
Exon sequences
Seq C1 exon
AAAAAGAGACTGATGAGTCACCAAAGAGTCATCTGACATGTTCAGCATTTCCTCACCACAAACAGTGTTCAG
Seq A exon
CACATGTTCCTCTCAGACTGCGTGGAGGGGACGGCCGGTGCTCTGGGAGGCTGGAGGTGTATCATAACGCTGTGTGGGGCTCAGTCTGTGATAATCTCTGGGACATCAGTGATGCTCAGGTGGTCTGCAGGCAGCTGGGTTGTGGAGCAGCACTAAGGGCTGATGGGAATTCAACCTTTGGTGCTGGTAAAGGTGTTGTGTGGCTGAACGGAGTCCATTGCAGAGGGAATGAGCTTCACCTGTGGGACTGTCCTTTCTCCCTGAAGAAGCACAATGATTGCTCCCATGAAAAGCATGCTGGACTCACCTGTGCAG
Seq C2 exon
ACTTGTCAGGTTTGTCAGTGTCCACTACTCTTTCCACATCAGCATCATCTTCTGCTGCAGTTTCTCAGACAGTGAGCTCAACATCAGTCTCTCCTCCACAAACTGGTCCAGAAACTCTCCCAGTCCCCCCAGTTCTGGTGATTGTACTGGGAGTTGTGCTCTTACTGCTCTTAGTGCCGCTGCTTATACTGATTCAGCAGAACAGAGTGATGAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095981-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.216
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=92.5),PF151021=TMEM154=PU(12.1=14.2)
C2:
PF151021=TMEM154=FE(58.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTCACCAAAGAGTCATCTGAC
R:
CTCTCCTCATCACTCTGTTCTGC
Band lengths:
278-593
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]