DreEX6001389 @ danRer10
Exon Skipping
Gene
ENSDARG00000045752 | si:ch211-161n3.4
Description
si:ch211-161n3.4 [Source:ZFIN;Acc:ZDB-GENE-110913-46]
Coordinates
chr4:10956153-10958447:-
Coord C1 exon
chr4:10958145-10958447
Coord A exon
chr4:10957747-10958061
Coord C2 exon
chr4:10956153-10956461
Length
315 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTGTCTATTATACAGAAA
3' ss Score
6.72
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
AGGTCAGGCTGGTTGGAGGTTCTCGCTGCTCTGGGAGGTTAGAGATTCTTCATGATCAGACGTGGATGTCAGTGTGTGATGCTGCCTTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGTACAGGTGCTGAGAGCTGCTGCTTTTGACAAAGGAGACGCTCAGATGTGGACACAAGAGATTCAATGTAGAGGAAATGAGTCTCAGATTCACCTCTGTCCAACATCACCGTTATATAAAATCAATTGTTCTCATCACAACTATACTGAACTTATGTGTGCAG
Seq A exon
AAAGTGTGAATGTAAGACTTGTAAATGGTACCAGTCGCTGTGCTGGTCGAGTGGAAGTTCTTCATAGAGGTCAGTGGGGAACAGTGTGTGAAGATGACTGGGATATGGCTGATGCTGCAGTGGTGTGTAGAGAACTGGGCTGTGGAGAACCTGTAGATGCTCTGGGTGATGCTCATTTTGGACCAGGATCAGAGCCAGTCTGGATGAGTTATGTTGTGTGCACTGGATCAGAGTCTACTTTGAAGAACTGTGGATTAACAGGATGGGGTACAAGCGCATGTAAACAAAATGGTGAAGCTGGAGTCATCTGCTCAG
Seq C2 exon
AAGTGAAACTCTTTGGAGATTCTCACTGCTCTGGGAGGCTGGAGATTCTTCATAATCAGACGTGGATGTCAGTGTGTGACGCTGCCTTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGTACAGGTGCTGAGAATTGCTGCTTTTGACAAAGGAGACGCTCAGATGTGGACACAAGAGATTCACTGCAGAGGAGATGAGTCTCAGATTCACCTCTGTCCATTTACATCAACATCATCATCACATGAAAACAACTGCACTCATGACAACACAGAACTTGTTTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045752-'2-3,'2-2,3-3=AN
Average complexity
A_C1
Mappability confidence:
86%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=96.1)
A:
PF0053013=SRCR=WD(100=92.5)
C2:
PF0053013=SRCR=WD(100=96.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGAGAGCTGGACTGTGGG
R:
AGCAGCAATTCTCAGCACCTG
Band lengths:
354-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]