DreEX6001391 @ danRer10
Exon Skipping
Gene
ENSDARG00000045752 | si:ch211-161n3.4
Description
si:ch211-161n3.4 [Source:ZFIN;Acc:ZDB-GENE-110913-46]
Coordinates
chr4:10953936-10955617:-
Coord C1 exon
chr4:10955315-10955617
Coord A exon
chr4:10954915-10955229
Coord C2 exon
chr4:10953936-10954034
Length
315 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTAAATTCATTTAGATG
3' ss Score
6.85
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
AGGTCAGGCTGGTTGGAGGTTCTCGCTGCTCTGGGAGGTTAGAGATTCTTCATAATCAGACGTGGATGTCAGTGTGTGATGCTGCCTTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGTACAGGTGCTGAGAGCTGCTGCTTTTGACAAAGGAGACGCTCAGATGTGGACACAAGAGATTCACTGCAGAGGAGACGAGTCTCAGATTCACCTCTGTCCAACATCAACATTATATGAAAACAACTGTACTCACAACAACAGTGTTAGACTGATTTGTGCGG
Seq A exon
ATGCAAGGAATGTGAGGTTGGTTGATGGTAACAGTCGCTGTGCTGGTAGAGTGGAGGTTTATCATAGAGGTCAGTGGGGAACAGTGTGTGAAGATGACTGGGATTTGGCTGATGCTGCAGTGGTGTGTAGAGAACTGGACTGTGGAGAACCTGTAGATGCTCTGGGTGATGCTCACTTTGGACCAGGATCAGGACCAATCTGGATGAGTACTTTAAGTTGTTATGGGATGGAATCTACATTAAAAAGCTGTGGAGCGGCAGGATGGGGCCAACACACCTGTGGTCATAATGATGATGCTGGAGTCATCTGCTCAG
Seq C2 exon
ATTGTGACGGGAATGAAACAAAACTCTCCGAATGTTCAATCTCTTCATGGAGTCGAGCTGAACGTTCTCATAGACGAGATGTTGGAGTCATCTGCTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045752-'6-10,'6-7,7-10=AN
Average complexity
A_C3
Mappability confidence:
90%=100=83%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=96.1)
A:
PF0053013=SRCR=WD(100=92.5),PF0053013=SRCR=PU(0.1=0.0)
C2:
PF0053013=SRCR=WD(100=97.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTCTGGGAGGTTAGAGA
R:
GAGAACGTTCAGCTCGACTCC
Band lengths:
348-663
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]