DreEX6001426 @ danRer10
Exon Skipping
Gene
ENSDARG00000096083 | si:dkey-21h14.8
Description
si:dkey-21h14.8 [Source:ZFIN;Acc:ZDB-GENE-110913-34]
Coordinates
chr4:11064037-11065224:-
Coord C1 exon
chr4:11065007-11065224
Coord A exon
chr4:11064496-11064804
Coord C2 exon
chr4:11064037-11064342
Length
309 bp
Sequences
Splice sites
3' ss Seq
TGTCTATTTCTTGTCTACAGCAA
3' ss Score
8.94
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TGATTTGTCAATGAAACTTTTTGATGATTTCCTCTCCTCTGTCTAATAAGGTAAAAGTGACTTTGATTGGCTTGTTGTTTGGTGCTTGTGAACTCATCTGGCTCTGTCTCTTGAACATTTCATTTCTGAGTTTATCAAGCAGCGTGTATGATCAGTGAAGATGGGGAGATTTTTAATTTGGATTTTTTTGTCTACTGTGCTGAGACTAACGAGGGCTG
Seq A exon
CAAACGTGAGGCTGGTTGGTGGTAAGAATTCCTGTGCTGGTAGATTAGAGGTTTATTATAATGGACGGTGGGGAACTGTGTGTGATGATTATTGGAGTTTGACAAACACTGCAGTGGTGTGCAGAGAACTGAACTGTACCCATACTTCAGATACAATGCGTGTTGCTCACTTCGGACCTGGATCAGGAAAAATCTGGATGGATGATGTGAGGTGTAGTGGATCTGAATCCTCAATATTTAAATGCCTACGAAGAAAGATTGGTGTAAATGACTGTAAACATATTGAGGATATTGGTGTTATCTGTTCAG
Seq C2 exon
ATTTAGGCATCAGACTGGTTGGAAATTCTCGCTGTTCAGGGAGATTAGAGGTGCCTTCTGGGAACACAAGGTACACAGTGTGTGATGCTGCCTTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGAACAGTTGCTGAGAGCTGCTGCTTTTGACAAAGGAGACACTCAGATGTGGACACAAGAGATTCACTGCAGAGGAAATGAGTATCAATTTGCTTTCTGTCCTGTATCATCTTCTCACAGCAATTGCTCCTCTAACAGTAATGTTGGACTTGTGTGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000096083-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=94.2)
C2:
PF0053013=SRCR=WD(100=94.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTGTTGTTTGGTGCTTGT
R:
TGTCCACATCTGAGTGTCTCCT
Band lengths:
350-659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]