DreEX6010733 @ danRer10
Exon Skipping
Gene
ENSDARG00000040002 | pnpla7b
Description
patatin-like phospholipase domain containing 7b [Source:ZFIN;Acc:ZDB-GENE-050309-66]
Coordinates
chr5:24566115-24566794:-
Coord C1 exon
chr5:24566751-24566794
Coord A exon
chr5:24566298-24566366
Coord C2 exon
chr5:24566115-24566199
Length
69 bp
Sequences
Splice sites
3' ss Seq
ATTTTTATCTCTTCTTCTAGGTG
3' ss Score
12.23
5' ss Seq
ATGGTATAT
5' ss Score
3.91
Exon sequences
Seq C1 exon
ACATTATGGAAAATGAAGAACAAGATGATACATGCAGATCTTTG
Seq A exon
GTGCCATCTGGTCATGAAATCAAGGCTCGTGTGCAACACTTCATCGAGGATCAGTTACACACCACCATG
Seq C2 exon
TGGACTGGTGTGCTGATCGGAGCTGCAGTTGCAGTTTCAATTCTAAGTATTTTTGCCTTATTCTTTTACAGAAGACACAAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040002-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.130 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGAAGAACAAGATGATACATGCA
R:
CAGCCTTGTGTCTTCTGTAAAAGA
Band lengths:
119-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]