DreEX6011307 @ danRer10
Exon Skipping
Gene
ENSDARG00000068157 | ehmt1a
Description
euchromatic histone-lysine N-methyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-040724-44]
Coordinates
chr5:28909939-28912165:-
Coord C1 exon
chr5:28911765-28912165
Coord A exon
chr5:28910465-28910564
Coord C2 exon
chr5:28909939-28910173
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTGTTAATGAAACACCATAGACT
3' ss Score
2.45
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GTATGGACAGCCTTGCAGATCCTCAGAGAAAAGGCAAAAGGCCTAAATCTCTCGGTGCTTCTCCAAAAGCCAGTAAACAACTGAGTGCTTCAGGCAGCAGGAAGAGCACAGGGTCCAGCTTTCAGCTTCTCTCTGGTCAAACATCCCTCAAACCACCAGCTGAAAACATCATCTCAGGAAACCACAGCTCTGTCCAACAAGATAAACCAGAAACTTTAGAGAAACAGAGTTTTGGGTCTGATAATGCTGACAAGAGAATCCCTGTTGTGTCCGTACCTGAAGCCGCACATGAAGAGGATGAGCAGAGAGAACCTGAGGGGGTTAAAGTGGTGAAGCCTGCTCCACCACGTCTAGCTTGGAAAACTATGGTCAGATCAGCACCAGCTCCACCTGCTCTGAAG
Seq A exon
ACTTTGAACAGGGAGAGAAGTGGGTATGAGAGAGACGTGGAGTCATCACCCACACAGCATCTCAGTTTACCTCAGGAACTCAAAGACTCCACACAAACAG
Seq C2 exon
GAAGCTTTACGTATGACCGGGTCCAAGGGTGGACAGATGTCTATTGAGGAGGCATTCAGAAATAAAGCTAGTTCTGAGAAACCAGAGAAACAGACTTCAACTGCTGTGATAGAGGATGCAGAACCGCACCAGAACAAAGAAACTGAGGATGCTCCAGAAGGCCCTGCTGAGGAATACACAGAGCTGCCTTTACATGCTCTGGCTCATGATAGCTTGTTCACAACAATCCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068157-'5-9,'5-5,6-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.899
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAAACCACAGCTCTGTCC
R:
GGACCCGGTCATACGTAAAGC
Band lengths:
251-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]