DreEX6014068 @ danRer10
Exon Skipping
Gene
ENSDARG00000059558 | tecta
Description
tectorin alpha [Source:ZFIN;Acc:ZDB-GENE-110411-120]
Coordinates
chr5:62531272-62534602:-
Coord C1 exon
chr5:62534032-62534602
Coord A exon
chr5:62532159-62532772
Coord C2 exon
chr5:62531272-62531842
Length
614 bp
Sequences
Splice sites
3' ss Seq
CATTTGCTACTGACTCTTAGCAC
3' ss Score
2.83
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
TGCTGTCGCTTTGGAAACAGACTTTGGTCTCTTGGTGACCTATGACGGATTGCACTACGCCTCCATCTCCCTCCCCAGCTCTTATTTCAACAACACTTGCGGCCTATGTGGTAACTACAACGATGACCCTGCCGATGACCCTGTGTTGCCAGATGGCTCTCTGGCAGAGAGCGTAGTGGAACTGGGTGGTAGCTGGCGAGCTGAAGACACAGATTTTCGTTGTACAGACGGCTGTGCCCAGAACTGTAGCATGTGTGAACCGGCAGCTGAAGCATTTTACTTTCGATCAGACTACTGTGGGCTCATCAATAAGACTGATGGGCCATTCAGAGACTGCAGGGCTGTGGTAGACCCAACAGCATTTGTTTACAGCTGCGTTTATGATATGTGCAGCAATCGTGATAACATCACCACCCTGTGCCAAGCTATACAGGCATATGCCCTTGCATGCCAAGCCCTGGGAGTAACCATACGACCCTGGAGATCACGCTCGTTCTGTG
Seq A exon
CACTGACATGCCCTGAGAACAGCCACTATCAAGTCTGCACAAGTGCATGTCCTGCCTCCTGCTCCGACTTAACATCTCATCTCTACTGTGCTCATCCATGTACCGAGGGCTGCCAGTGTGACCAGGGTTATGTGCTGAGTGGCAGCCGCTGTGTCCGTCGTTTTGAGTGCGGGTGTGAACGTGACGGCCTGTATTACGCCCTGAACGAGACTTTCTGGGCAGGGGAAGGGGGTGAGGTGGGTGAAGACTGCTCCCAGCGTTGTGTGTGTGGCCCGGCGGGTGAAGTAAAATGCTTCAATGACTCTTGTGGCGAAGGCGAGGTATGTGCAGCAGAAGTCGGGTTGCTCGGGTGTTACCCTCGTCGCGAAGCAATATGTTCGCTATCCCAGTCACAAATACTGGCCACATTTGATGGGTCCACGATGCCATTCCCTGATGAAAGCTCATTCTACTTGGTCAAAACTTTGGGACGTTTGCCTGCAAATGTAACATCAGTGGAGGTGAAGATTGGAAGGAAGCTTGTGAATAAAGGCCCTACGTGGTTACGGCCAGTGGTTGTTAGGGTTGGTCATTTGGAAGCACAGATAGGCGGCTCAGATTTCGACTTGATCAAG
Seq C2 exon
GTCAATGGTGAACCAGCAATTGTTCCTTACGTCCATCCAGTGGAGCCTCTAATGATCTACCGATCCTCTGGTAATACCACGGTGATTGAGTGGAGTGGCTTGGTCCGCACTCGATACTCACGTCAAGGCCTACTAAACATCACTCTCTCCACTCTCTTTTACAACACCACCTGTGGTCTGTGTGGCTTTTTCAACGGAGATCCAATCGATGACCTCCGGCTACCAAGTGGAAGGCAGGCCGATTCAGCCGACCAGTTTATTGAAAGCTGGAGAGCTATTGCAGACGATCTGACATGCAATGGCGATTGTGAGGACTTGTATCGCATGTGTACAGATTTACGGCAATACCAGAGCCCATGGCTGTGTGGGAACATCAACGACCCAGGAAACAGCTCATTCCTAGCTTGCCATACAGCGGTTAATCCGTCTCCTTTCTTCAGGAACTGCCTCTACAACATGTGTGTAAGGGAGGGAAACCGTTCTGCCCTGTGTAACTCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059558-'9-9,'9-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.8)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=26.3),PF127142=TILa=WD(100=30.2),PF0009420=VWD=PU(50.0=38.5)
C2:
PF0009420=VWD=PD(48.7=40.3),PF087426=C8=WD(100=40.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTAGCATGTGTGAACCGG
R:
CCACTCCACTCAATCACCGTG
Band lengths:
356-970
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]