DreEX6014887 @ danRer10
Exon Skipping
Gene
ENSDARG00000074765 | mhc1zja
Description
major histocompatibility complex class I ZJA [Source:ZFIN;Acc:ZDB-GENE-130206-11]
Coordinates
chr3:615623-620506:-
Coord C1 exon
chr3:620222-620506
Coord A exon
chr3:619838-619963
Coord C2 exon
chr3:615623-615652
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCTACTTTTTTTAGATG
3' ss Score
10.12
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
CTCCTCCAGATGTTTTTAAATTGACAAGAAAGTCCACCAAGGATGAAACTAAGCTGAAACTCACCTGTCTGGCCACTGGCTTCTACCCCAACGACGTGATGTTGAACATTAGGAGATATCGCGTATATCTGCCTGAACAAGAGACCATATCTACAGGAGTTCGACCAAACCATGATCAAACCTTCCAGCTGAGCAAGAGTGTGGAGATCAAGGAGGACCAGATAGATAATTATGATTGTTCTGTGTCCCACAGAACCTTCAAACAACCAATTATCATAAAATGGG
Seq A exon
ATGGAACAGATTTAGATGGAATATACACCGGCCACCCACCAGAGACTGTCCCAGTTGTGATCGGAAGTGTGCTTATTTTTTTAGCCATTTTAGGCGTAGTGGTTTTTCTGGTGATGAAATGTGGTG
Seq C2 exon
AACAGGACAGCAGCAGCACAGACACCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074765-'5-10,'5-5,7-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=87.5)
A:
PF143161=DUF4381=PU(40.8=93.0)
C2:
PF143161=DUF4381=FE(13.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAACTCACCTGTCTGGCC
R:
GTGTCTGTGCTGCTGCTGTC
Band lengths:
257-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]