DreEX6015437 @ danRer10
Exon Skipping
Gene
ENSDARG00000104593 | cyp2k18
Description
cytochrome P450, family 2, subfamily K, polypeptide 18 [Source:ZFIN;Acc:ZDB-GENE-040426-1584]
Coordinates
chr3:12558901-12561169:+
Coord C1 exon
chr3:12558901-12559112
Coord A exon
chr3:12559181-12559343
Coord C2 exon
chr3:12561020-12561169
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTTCCTCTGTTGTCCTCCAGCTC
3' ss Score
10.98
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GAGAGAAAATGGCTGTTGTTGAGTCACTTCTGCAGTTTGCCAGCACAGGCACATTGCTGGGTGCTTTGCTGTTGTTTCTGGTTTTGTATTTAGTTTCATCTGGATCTGGATCTCAGAAAGAAGGGAAAGAGCCACCGGGACCCAAACCACTGCCCCTGCTGGGAAACCTGCTGACACTTGACCTCACAAGAGCCTTCGACACTTTTTTTGAG
Seq A exon
CTCTCCAAAACCTATGGAAATATATTTCAAGTGTATTTGGGGCCCAAAAAAACAGTGGTCCTAGTTGGATACAAAACCGTCAAAGAAGCACTTGTGAACCATGCAGAAGCATTTGGTGATCGAGAAATTGGACCTAGTTTCAGGATAATGAATGACGAACATG
Seq C2 exon
GAATTGTATTTTCCAATGGAGAGAACTGGAAAGAGATGCGACGCTTCGCTTTAAGCAACCTGCGGGACTTTGGGATGGGCAAAAGAGGAAGTGAAGAGAAAATCATCGAAGAAATTCATCATCTCAAAGGAGAATTTGATAAGTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104593-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(6.5=38.2)
A:
PF0006717=p450=FE(13.5=100)
C2:
PF0006717=p450=FE(12.5=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCTGGGTGCTTTGCTGTT
R:
TTTTGCCCATCCCAAAGTCCC
Band lengths:
244-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]