DreEX6018125 @ danRer10
Exon Skipping
Gene
ENSDARG00000004748 | zgc:100868
Description
zgc:100868 [Source:ZFIN;Acc:ZDB-GENE-040801-33]
Coordinates
chr3:39344595-39345209:-
Coord C1 exon
chr3:39345189-39345209
Coord A exon
chr3:39344945-39345107
Coord C2 exon
chr3:39344595-39344863
Length
163 bp
Sequences
Splice sites
3' ss Seq
TGTGCATTTTTTATTGTCAGTGT
3' ss Score
6.43
5' ss Seq
CAAGTATAA
5' ss Score
-0.82
Exon sequences
Seq C1 exon
GGTGTGACGCACAACTAGATG
Seq A exon
TGTGTGGTACGGCACCTCTCAACTCAAGGATAGTGGGAGGACAGAATGCACCGGTTGGCGCTTGGCCATGGCAGGTCAGTCTTCAAAGAGACGGCAGCCATTTCTGTGGTGGATCTCTCATTAACAACCAATGGATTCTGACTGCAGCCCATTGCTTTCCCAA
Seq C2 exon
CCCTTCGACGACTGGTCTACTTGTATATTTGGGCCTACAAAAACTAGCATCATTTGAATCATACTCGATGTCCAGTGCTGTCTCCAATATCATAAAACATCCAAACTACAATAGTGATACTGAAGACAATGACATCACTCTTCTGCAACTGGCCTCAACAGTGAGCTTTTCGAACTACATCAGACCTATCTGTCTGGCTGCATCCGACAGTACTTTCTTCAATGGAACTTTGGTCTGGATCACTGGATGGGGGAACACTGCCACAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004748-'2-2,'2-1,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.2=80.0)
C2:
PF0008921=Trypsin=PU(41.0=97.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]