DreEX6018617 @ danRer10
Exon Skipping
Gene
ENSDARG00000100250 | ftr41
Description
finTRIM family, member 41 [Source:ZFIN;Acc:ZDB-GENE-090507-6]
Coordinates
chr3:44844288-44848247:-
Coord C1 exon
chr3:44847552-44848247
Coord A exon
chr3:44844645-44844728
Coord C2 exon
chr3:44844288-44844521
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTCATTTATGTTTTCTCTAGCAA
3' ss Score
7.24
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCCTCCACTGCGGACACAGCTATTGTAAGAGCTGTATTACAGACTTCTGGGATCAGGAGTATGAGAAGAGAATCTACAGCTGCCCTCAGTGTAGACAGAGCTTCACTCCAAGACCTGCTTTAGCTAAAAACACCATGCTGGCTGAAGTGGTGGAGAAGCTCAAAAAGACTAAACCTCCTGCTGACTGTTGTGCTGGAGCTGGAGATGTGCAGTGTGATGCCTGTACTGGAACAAAATACAAAGCCGTCAAGTCCTGTCTGCAGTGTCAAGAATCTTACTGTCAAACTCATTTTGAGCGTCATGAGGAGTTTCACTCTCGTAAACCACACAAAGTGATTGATGCAACTGGACAACTGCGGGACATGATCTGCCAGAAACATGGGAAAGAGCTGGAAATCTACTGTATTACTGACCAACAATGCATCTGTGAGCTGTGTAAGGAGTATGAACATAAAAACCACGCAACTGTATCAACAGCAGAACAGATGACAGAGAAACAG
Seq A exon
CAAGAGCTGAAGGAGAGGCAGGTAAAGCTTCAGCAGAGAGAGAAAGCTCTTCGGAAACTGAAAAATGCAGTGGAGTCTCAAAAG
Seq C2 exon
CGATCTGCACAGACAGCAGTGGAGGACACTGAGAAGATCTTTACTGAGCTCATCCGCTCCATTCAGAAAAAACGTACTGAGCTCACACAGGTAATCAGTTCTGCAGAAAAGACTGCAGTGAGTCAAGCTGAAGAACACATGGAGTATCTGGAGCAAGAGATTGAAGATCTGAGGAGGAGAAACGCTGAGCTGGAGCAGCTTTCACAAACACAGGAACATGTTAATTTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100250-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=0.393 C2=0.154
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=WD(100=20.9),PF0064319=zf-B_box=WD(100=19.9),PF121283=DUF3584=PU(14.8=13.1)
A:
PF121283=DUF3584=FE(14.8=100)
C2:
PF121283=DUF3584=FE(42.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAACAATGCATCTGTGAGCT
R:
ACCTGTGTGAGCTCAGTACGT
Band lengths:
181-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]