DreEX6020686 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10397271-10399460:-
Coord C1 exon
chr6:10399221-10399460
Coord A exon
chr6:10397559-10397720
Coord C2 exon
chr6:10397271-10397464
Length
162 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTGTAGGGA
3' ss Score
8.86
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
AGACACTTCTCAGTGTTTGCTGTACATTTCCCCGGTGCGGATGCCCTGAGCACTATATACAGCAGTATTTTGAGTGGTCATTTCCAGCAGGGTGGCTACAGTTATGGCGTTAGTCGTATGTCCAGCACGCTGGTGCAGGCCGCCATTTGCCTGCATCAGAAAATGAGCCAGAACTTCTTGCCCACAGCCATTCGGTTCCACTACATTTTCAACCTCCGGGACATCTCTAGCATCTTCCAG
Seq A exon
GGAATTCTCTTTGCTCTGCCAGAGCATGTGCGGTACCCTATAGACCTAGTGCACCTATGGTTGCACGAGTCGTCTCGTGTGTATTCAGACAAACTGATGGAGGAGAAGGATGTGGAGCTCTTCAACAAGATCCTGTTGGACACGGGCAAGCGATACTTTGAG
Seq C2 exon
GGTATAGATGAGTCTATTTTTATCAACCAGCCATTGATCTACTCTCATTTTGCTCATGGTGTGGGTGAGCCGCGTTACGCGCAGGTGACTGACCTGGAGAAGCTTCAGAAGACACTGATGGATGCTCTCGAGCACTACAATGAGCTGCACTCTGACATGAATCTGGTGCTGTTTGAGGAAGCCATGCAACACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'45-47,'45-46,46-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(29.2=100)
A:
PF127752=AAA_7=PD(8.1=40.7)
C2:
PF127802=AAA_8=PU(7.1=29.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTTGCCCACAGCCATTC
R:
ATGGCTTCCTCAAACAGCACC
Band lengths:
253-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]