DreEX6020740 @ danRer10
Exon Skipping
Gene
ENSDARG00000006639 | lnpb
Description
limb and neural patterns b [Source:ZFIN;Acc:ZDB-GENE-030131-9455]
Coordinates
chr6:10603407-10610730:-
Coord C1 exon
chr6:10610566-10610730
Coord A exon
chr6:10610260-10610346
Coord C2 exon
chr6:10603407-10604513
Length
87 bp
Sequences
Splice sites
3' ss Seq
ATCAATGTGTTTTTTTTTAGACC
3' ss Score
9.15
5' ss Seq
CAGGTCCCA
5' ss Score
-1.05
Exon sequences
Seq C1 exon
CTTTCCGTTGTGCTTATTGCTACTTCATGAACCCTGCGAGAAAAACACGTCCCCAGGCCCCCAGGCTCCCAGAATTCAGTTTTGAGCGCAGGCTGCGCTCTGAATCTCCTGAAACGCAATCTTCTGCCGCCACAGAGACACCGGAGGACAGCGACGCCCCTGAAG
Seq A exon
ACCGTATTGTCTCGGCTCGCTCCACTCGTGTTTCTCACTCTGGCACCCCCTGGAGTAAAGTTCATAGTTTCGAGAGAATTCACACAG
Seq C2 exon
ACGACATGGAAAGAACTACATCAGCTGACCCTCAGAACCCAGCAGCCGATGAGGCGCCTGTCCTGCAGGAATCAGAAACTGAAGAGTCACAGCCTCAGGACGTCCCGCGTGAAGAGGCTGAAGCCCTGGAGGAACAAAAGAAAGAGGATGAATCAAACTAAACCGTGTGAACAGGAGCTTTTTCTGGGGTTTGAGCTTCTTCACTCTAGTGCATGTTAATTTAGTACATCTTTTGAGCTCTGGAGGCCGTTGTACGTTTTTACTGCTAATTTATTTATATATGCACTACAAGGTTTACATAATGGGCTGAGTGTCATAACCCACAGTACAGTAATCGAAGCGGTGTGGTGATTGGTGATGACCACATTACCCGCGCATGTTTTGTGTATGAAGGTGATTTAACAAAACAAACTCCTGTTTTATAGTATGTTTTTGCAGTGTTAAGAGGAATTATTTAATAGTAAATAAGGATAAAACTTGTAGCAGGATAAGTTTAGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006639-'19-17,'19-16,21-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.701 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF100584=DUF2296=PD(19.6=17.9)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCTGCGAGAAAAACACGT
R:
GGGTTCTGAGGGTCAGCTGAT
Band lengths:
176-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]