DreEX6024302 @ danRer10
Exon Skipping
Gene
ENSDARG00000001557 | tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:ZFIN;Acc:ZDB-GENE-030131-2081]
Coordinates
chr6:52232106-52234797:-
Coord C1 exon
chr6:52234430-52234797
Coord A exon
chr6:52234182-52234318
Coord C2 exon
chr6:52232106-52232205
Length
137 bp
Sequences
Splice sites
3' ss Seq
AGTAACTTTGATCGTTACAGTGT
3' ss Score
4.03
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CAACTAATTTCTTCTCTACCACGATTTGGCAACACTGGATTGGGTTACAACCATCCGTCCCGTTCTTCAAATAGCAGCTCCGAGGCTCGACAGCCGCTTCAGTCCCGAAAACTGAAACTGAAATTTAATACCGCCCGTTTCATTAGACACACAGCCGGTAAAACGTGGTGCTCATCCCGACTAGCGTGTGTGTGAAAGGCGGAGAAGAGAATTTCTAGCATGTTCTAGGAGGAGGACGGACTGGTTATCTAGTATAGGTCTCTAGCTCGTTGTTAAATACAGTAACTGCTAACTTTAAACAGCCGATCACTAAAGCTCTTCCTTCAGCCTTTACTTTCCGGGTTTTTCCACCAACACGATTCTATAGG
Seq A exon
TGTTAACATGCCTCAGAAGCGGCGCACGCAGTCGTGGACGGATCTCAAACAAGCCGGTAACGAGTGCTTCAAAGCGGGTCAGTATGGAGAAGCGGTGACCCTCTACAGCCAGGCCATCCAGCAGCTGGAGAAATCTG
Seq C2 exon
GTCAGAAGAAAACTGAAGATCTGGGTATTTTGTACTCAAACAGGGCCGCCAGTTACCTGAAAGATGGAAACTGCAATGAATGCATTAAAGACTGCACGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001557-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.205 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF134141=TPR_11=PU(46.7=79.5)
C2:
PF134141=TPR_11=FE(44.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCCCGACTAGCGTGTGT
R:
GCGGCCCTGTTTGAGTACAAA
Band lengths:
247-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]