DreEX6025829 @ danRer10
Exon Skipping
Gene
ENSDARG00000016074 | cryz
Description
crystallin, zeta (quinone reductase) [Source:ZFIN;Acc:ZDB-GENE-050306-24]
Coordinates
chr2:11334378-11335800:-
Coord C1 exon
chr2:11335690-11335800
Coord A exon
chr2:11335387-11335502
Coord C2 exon
chr2:11334378-11334530
Length
116 bp
Sequences
Splice sites
3' ss Seq
GCTGTTCATTTGTTATGCAGAGA
3' ss Score
5.67
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
CCGCATGCTTTTGTTTTGAGTACACAGTCGAGTACGGTGGCCGAAAACAGACAAAACTCTTTCATACGGAAGTCAGAAGCTCCAGCCAGTCAGCTGATACCTGCGTGATAG
Seq A exon
AGACCACCATGGCCGCATCTAGATTAATGAGGGCTGTCAGAGTGTCCGAGTTTGGAGGCCCTTCAGTTTTAAAACTCTGCTCAGACCTGCCTGTACCAAGTCCTGGTCAGAAACAG
Seq C2 exon
GTTCTCATACGAGTCCATGCATGTGGTGTAAACCCAGTGGAAACATACATCCGCTCTGGATCTTATGCTCGGAAACCCAGTTTGCCCTATACTCCAGGATCAGATGTCTCCGGTGTGGTTGAAGCTGTTGGCGAAGGTGTTTGCCTCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016074-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
NA
A:
PF082407=ADH_N=PU(3.0=5.6)
C2:
PF082407=ADH_N=FE(75.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTACACAGTCGAGTACGGT
R:
GTAGGAGGCAAACACCTTCGC
Band lengths:
246-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]