DreEX6035195 @ danRer10
Exon Skipping
Gene
ENSDARG00000104110 | col4a2
Description
collagen, type IV, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-070725-3]
Coordinates
chr9:8891781-8894353:+
Coord C1 exon
chr9:8891781-8891879
Coord A exon
chr9:8893966-8894112
Coord C2 exon
chr9:8894246-8894353
Length
147 bp
Sequences
Splice sites
3' ss Seq
ACTATGCCTTTGTTTTTCAGGTT
3' ss Score
11.1
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
GTGATAAAGGAGAGCCAGGGATGATGGGATTTCCAGGAAGACGTGGTTTTCAAGGTGACAGGGGCCCTTTTGGACCTAAAGGAGATACCGGACCCCCAG
Seq A exon
GTTTTCCTGGATTACCTGGGGCTAAAGGATATCCACCAGTTCCACAGAAACTTCCAGGGGAGCAAGGGCCGCCTGGTCAGATGGGTATTCAGGGACCATCGGGGCGCAATGGAAACCCAGGCCCTGCGGGACCTCCTGGTGATTCAG
Seq C2 exon
GTCCAAGTGGACACAAGGGGATGCCAGGTCTTCCTGGAATACCAGGAAGTCCAGGCTTCCGTGGAGAACCTGGATCAATGGGCCACTCTGGTCTGCAAGGCGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104110-'45-50,'45-48,46-50=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(9.0=20.6),PF0139113=Collagen=FE(50.0=100)
A:
PF0139113=Collagen=PD(24.6=32.0),PF0139113=Collagen=PU(57.4=70.0),PF0139113=Collagen=PU(4.8=6.0)
C2:
PF0139113=Collagen=PD(41.0=67.6),PF0139113=Collagen=FE(58.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGAGAGCCAGGGATGATG
R:
CTTGTTCGCCTTGCAGACCAG
Band lengths:
202-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]