DreEX6037775 @ danRer10
Exon Skipping
Gene
ENSDARG00000074749 | abca12
Description
ATP-binding cassette, sub-family A (ABC1), member 12 [Source:ZFIN;Acc:ZDB-GENE-030131-9790]
Coordinates
chr9:41014358-41019548:-
Coord C1 exon
chr9:41019476-41019548
Coord A exon
chr9:41018951-41019124
Coord C2 exon
chr9:41014358-41014551
Length
174 bp
Sequences
Splice sites
3' ss Seq
AAATTCTTTCTTTCTTGTAGTCA
3' ss Score
6.99
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTTTAAAGATTCCAGCCTTCCTAATGCCACTTCAGTCTTGGCAGCTTTTAACAACACACTACTGGTTGATCAG
Seq A exon
TCAATGGAGTCTGTTTGGGAGTCAGTGAACATCCTGAAAAAATCCCTATGCAGTTTCTCCATGACTGGCATGAATATATCAGCCAGTACCCTGGATCCATATACGCAAGGCCTAATAAACTTCTGTAGCTCCAACGACACGGTTCTAGAGTCATCTTTATTTACCATGAACCAG
Seq C2 exon
GTATTGACCCAATGGCTGCTCAGTAACACAACAGAGGTAGTGGAAGTTGTTGGTGGAACTGTCATGGTCATGGATAGACTTCAGCAGGAGTCTTCAGTTTGGGACTTCTTACTTGGCCTGCGGGATGTCTTCCTGAAGCCCACAGATGAAGAGGTGCTGCAAGCTGGAGTAGGAGAGCTGGAGAATCTTAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074749-'6-8,'6-6,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCCTTCCTAATGCCACT
R:
CCAGCTCTCCTACTCCAGCTT
Band lengths:
244-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]