DreEX6038653 @ danRer10
Exon Skipping
Gene
ENSDARG00000040257 | slc38a11
Description
solute carrier family 38, member 11 [Source:ZFIN;Acc:ZDB-GENE-050417-122]
Coordinates
chr9:50303940-50310084:+
Coord C1 exon
chr9:50303940-50304052
Coord A exon
chr9:50304368-50304414
Coord C2 exon
chr9:50309944-50310084
Length
47 bp
Sequences
Splice sites
3' ss Seq
AGGAGTTGTAAATTTTTCAGAGC
3' ss Score
3.32
5' ss Seq
AAGGTGACA
5' ss Score
5.19
Exon sequences
Seq C1 exon
CGGAATGTAGAAATCTCTTCCAAAATTAAAATTAATCCTCAGCGTCCTGCTGTCAAACTTGATGCAGTGATCCAAGGCGGAGGAAAACACGCAATGTGGACAACTTCACCCAA
Seq A exon
AGCTTGACGGACACTGGCGCCAGACTGACTCTGTGAGGCTGTAAAAG
Seq C2 exon
TGGGCGGTCTGGAGGAATCAAGCGGACACTTTTAATAGCGCCAGGACATGGGAGACCCTCCATCTGCACCAGCAGGACATCACTGAAGGGCTGTTTTTAATGGAAAACGACAAAAGAGAGAAAAGCGACAAAGCTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040257-'1-4,'1-2,2-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.964
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGCAGTGATCCAAGGCG
R:
CCTTCAGTGATGTCCTGCTGG
Band lengths:
144-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]