DreEX6040436 @ danRer10
Exon Skipping
Gene
ENSDARG00000077384 | dnah11
Description
dynein, axonemal, heavy chain 11 [Source:ZFIN;Acc:ZDB-GENE-100922-8]
Coordinates
chr16:19554656-19563614:-
Coord C1 exon
chr16:19563447-19563614
Coord A exon
chr16:19555146-19555262
Coord C2 exon
chr16:19554656-19554780
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGTGTTGTTTTGAAGGAT
3' ss Score
9.81
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
GCCCTTTTTACCACCATGCTGGAGTTCCAAAGGTTGGAGAAGCTGGTGTTTGGAGGTCTCAGAGGAAGAGTTTACACTGAGCAGGTTTCTCGGTTACATAAAGAGTTTCTCCTTCTCTGCAAAGCCATAAAGGATCAAGAATACAATCCACTCGATTTGAGTTCTCAG
Seq A exon
GATTTTGAAAAAGACTTTTCCAGTTTTCAAGAAAAAGTGGCAGATTTTGATCGACAACTGTCCAATATTTTATGCCTGGCCTTTCAAGATTGTTCAGGATTGGAATCAGTTTTCAAA
Seq C2 exon
AAAAAGAGGAACAAACTGCATTTGAACAAGAACATGCCTGCAATGACAGGGTCTCTGAAGTGGGCAAAAATGCTAAGAGACAGAATTCAAATCCCTTGGAACAATTTTCGATTTGTTCTAGATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077384-'6-8,'6-6,8-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(9.5=100)
A:
PF083857=DHC_N1=FE(6.5=100)
C2:
PF083857=DHC_N1=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTTTTTACCACCATGCTG
R:
AGCATTTTTGCCCACTTCAGAGA
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]