DreEX6042241 @ danRer10
Exon Skipping
Gene
ENSDARG00000075723 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
Coordinates
chr16:40412050-40414716:-
Coord C1 exon
chr16:40414636-40414716
Coord A exon
chr16:40412235-40412300
Coord C2 exon
chr16:40412050-40412136
Length
66 bp
Sequences
Splice sites
3' ss Seq
AATATCGACTCATCGTGAAGGTG
3' ss Score
2.59
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
CAGTATATGTGAATGATTCTAGCAGTACATCTTCTGGAGAGTTCTATGAAAACACAAAGACAGACACAGACAACATGCCAC
Seq A exon
GTGCAGAGACATCATCACCACTGCTGTCTTATGATGACTGTCACTCACCACAACTGGAAAATAAAG
Seq C2 exon
AAGTAGATGTGAATGATTCAAGCAGCACATCTTCTGGCGAATGCTATCAAAACACAGAGCCTGACGTGGACGACATTGCCAAGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075723-'8-10,'8-9,9-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.926 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAATGATTCTAGCAGTACATCT
R:
AAGGCTTGGCAATGTCGTCC
Band lengths:
161-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]