DreEX6042706 @ danRer10
Exon Skipping
Gene
ENSDARG00000069765 | SYNGAP1 (2 of 2)
Description
synaptic Ras GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:11497]
Coordinates
chr16:45704066-45724502:+
Coord C1 exon
chr16:45704066-45704138
Coord A exon
chr16:45710709-45710770
Coord C2 exon
chr16:45722279-45724502
Length
62 bp
Sequences
Splice sites
3' ss Seq
GATACGGTGATTTCTCTTAGGGG
3' ss Score
4.24
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
ACTCATGGCGGTGGAGGACGAGTTGAGAGTAGGAGTGGTGCCTGAACACAAACCCAGAGTATTTGCGGATCAG
Seq A exon
GGGAGGCGGCAGTCCATCCTAGTGCAGCCCCGCCTTGCGCCCGTCCCACTGCGAATGCACAG
Seq C2 exon
CCAACAACAAAGCTTCATGGAGGACAATCTGGAACCTAATTGGAGGCCTCACCTAGGACATTCTTCAGGTTGGCCTGGGTTTAATTCCAGGGCGCTGTCACGCGATTCGGTTGGTTGACAGAGGGGAAACTAAGGCTTTGACTCAATGCCAGAGCCGATCCAAAGAAAAACAAATATAGGTTCCCTTCCTCTGACGTGCCCTCTCTCCGATATAGTTTGATACGATGACGAACGTTTGGGATGCTTAACGCCCATCAGATGGCTTCTTCTTGACGGCATGCAAGATGACGTCGCATGCGACGCAGAAGTTGGATGAGAGAGCTGGAGAGGTTCTGTGGATCAGATCAATCTCAAAGGTGCTGTTTTTTAGGTTCTTTACTAACTACATGTAGGATATTGAACAATACTTCTTCTCATTATGATCTTCACGTGCCACATTAACTCTGCCTGTCATGCTTGCCTGTGTCTCAATCACGTCTTTTATTTTTTGGGGAAACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069765-'22-29,'22-25,24-29=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.429 C2=0.795
Domain overlap (PFAM):
C1:
PF120043=DUF3498=PD(1.9=44.0)
A:
PF120043=DUF3498=PD(0.8=23.8)
C2:
NO
Main Skipping Isoform:
ENSDART00000093365fB748
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCTGAACACAAACCCAGA
R:
GTGACAGCGCCCTGGAATTAA
Band lengths:
137-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]