DreEX6045074 @ danRer10
Exon Skipping
Gene
ENSDARG00000042953 | cyp2n13
Description
cytochrome P450, family 2, subfamily N, polypeptide 13 [Source:ZFIN;Acc:ZDB-GENE-041001-158]
Coordinates
chr20:25618691-25619397:-
Coord C1 exon
chr20:25619237-25619397
Coord A exon
chr20:25618923-25619099
Coord C2 exon
chr20:25618691-25618832
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGTTCATTTGTATTTATTAGATC
3' ss Score
7.35
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GAGCTGCTTTTGACCCAACAATCCTATTATACAATGCTGTTTCCAATATAATCTGTCAAATGGTGTTTGGCCAGAGATTTGACTATGCTGACCACCAGTTCAAAACAATGTTAAAATATATTTCTAAAAGCATTCAACTAGAAGGATCCGTTTGGGGACAG
Seq A exon
ATCTATGAAGCATTTCCAGCCATTATGAAGCATCTTCCAGGGCCTCACAATGATATTTTCAGTAACTATGACTTACTGAAGAGCTTCGTACATGAGGTCATTGTAAAACACAAGGCTAAACTGGATCCCTCAGAGCCTCGTGACTACATCGATACCTTCCTAATCGAGATGAAGGAG
Seq C2 exon
AAACCCCATGAAAGAGTAAACGGCTTTGAGGAACCAAACCTTGTTGCATGTGTTCTTGACCTGTTTCTGGCCGGAACTGAATCCACATCCAATACATTATGTTGGGGGCTCATATACCTCATAATGTATCCAGACGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042953-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTTTTGACCCAACAATCC
R:
GATGTGGATTCAGTTCCGGCC
Band lengths:
248-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]