DreEX6045085 @ danRer10
Exon Skipping
Gene
ENSDARG00000022650 | cyp2ad3
Description
cytochrome P450, family 2, subfamily AD, polypeptide 3 [Source:ZFIN;Acc:ZDB-GENE-041001-156]
Coordinates
chr20:25650155-25651291:-
Coord C1 exon
chr20:25651115-25651291
Coord A exon
chr20:25650517-25650658
Coord C2 exon
chr20:25650155-25650342
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATAATTCCCATTTTCCACAGAAA
3' ss Score
8.38
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTGTATAATGCATGTCCTTGGCTCTTTGAATATTTACCCGGCCCTCACCAGACAATTTTTTCCAACTATAAGAAGATCAAAGACTTCCTGAGAGGGGAGATTATTAAGCACAGAGAGGACTGGGACCCTGCAAACCCACGTGACTTTATAGACAACTACCTGACTGAGATGGAAAGG
Seq A exon
AAAAAGAGTGACCCTGAAGCTGGTTTTAACATAGAGGGGTTAGTGGTTACTTGTCTGGACCTGATTGAAGCCGGGACAGAGACTGCAACTACAACCTTACGCTGGGGTCTGCTTTTTATGATCAAGTTTCCAGAAATACAAG
Seq C2 exon
AAAAGGTCCAGGCAGAGATAGACAGGGTGATTGGACAGTCACGTCAACCCTGCTTGAATGACAGAGTTAATATGCCCTATACTGAAGCTGTGATTCATGAGATTCAAAGATTTGGGGATGTTGTTCCACTGGGATTCCCTAAACGGGCTGTTAAAGACACACAACTAGGGAAATATTTCATTCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022650-'7-11,'7-10,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=FE(13.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATTTACCCGGCCCTCACCA
R:
ATCACAGCTTCAGTATAGGGCA
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]