DreEX6046132 @ danRer10
Exon Skipping
Gene
ENSDARG00000009123 | sele
Description
selectin E [Source:ZFIN;Acc:ZDB-GENE-041014-221]
Coordinates
chr20:34071305-34072174:-
Coord C1 exon
chr20:34071989-34072174
Coord A exon
chr20:34071695-34071871
Coord C2 exon
chr20:34071305-34071496
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTCCTCACCATTCAGTTG
3' ss Score
9.11
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
TAGTAAAATGCAAAGCAAAGGATATCACCCCACCAGCTCATGCTAAAGTCCACTGCACTAATGAAGATATACCCTATAAATCTCAGTGTGAATATTCCTGTGAGGAGGGTTATGAACTAAAGGGTTCAAGTACAACAACGTGCACTTCAACAACAGAGTGGTCAAGTGAACCAACAACCTGTGAAC
Seq A exon
TTGTTCAGTGTCCAGCCCTTGAAAAACCTGTCAATGGCGATCTCAGCTGCACTTTAAGCTTTAGTTATGGGAGTAAATGCAGCTTCAGTTGTGGAGAAGGATTCATCCTCACAGGAGTTTCAGAGACCAGCTGTACAAAAACAGCAGAGTGGAGTCAGGAACCACCTCGCTGTGAAG
Seq C2 exon
TTGTTCAATGCTCAGAGTTGGCCAATCCACAGAAAGGTGGCATGCAATGTAATCATCCGATGGGTCAGTTCAGCTATCAGTCCAGCTGTGAGTTTGTGTGTGATGAAGGATACAAACTGCAGAACTCCAGCTCCTCTACGCTGATCTGTGGAGCAACGGGACTCTGGAATGATTCACAGCCCACTTGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009123-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=WD(100=92.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATATCACCCCACCAGCTC
R:
GCTGAACTGACCCATCGGATG
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]