DreEX6048875 @ danRer10
Exon Skipping
Gene
ENSDARG00000002295 | si:dkey-21p1.3
Description
si:dkey-21p1.3 [Source:ZFIN;Acc:ZDB-GENE-081105-162]
Coordinates
chr8:14839699-14840045:+
Coord C1 exon
chr8:14839699-14839752
Coord A exon
chr8:14839898-14839930
Coord C2 exon
chr8:14839992-14840045
Length
33 bp
Sequences
Splice sites
3' ss Seq
ATCTTATATTCCTTCATTAGAAT
3' ss Score
6.14
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GGACGCAGTGGAACAGATGGACTGCTGGGAGTTATAGGAACCGAAGGGGACCCA
Seq A exon
AATGACATCCTGGATGACAGATTTAGCACAGAA
Seq C2 exon
GGTGATATTGGATTCAGAGGACGTCCAGGGAGACCAGGTCTGCAAGGTAGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002295-'58-50,'58-49,59-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.5=100)
A:
PF0139113=Collagen=PU(3.3=18.2)
C2:
PF0139113=Collagen=FE(27.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCAGTGGAACAGATGGACT
R:
CACTACCTTGCAGACCTGGTC
Band lengths:
104-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]