DreEX6052410 @ danRer10
Exon Skipping
Gene
ENSDARG00000008553 | zgc:136872
Description
zgc:136872 [Source:ZFIN;Acc:ZDB-GENE-060421-5204]
Coordinates
chr17:3072223-3074568:+
Coord C1 exon
chr17:3072223-3072308
Coord A exon
chr17:3072400-3072471
Coord C2 exon
chr17:3074408-3074568
Length
72 bp
Sequences
Splice sites
3' ss Seq
TATTAATCTGGTCTCTTTAGATC
3' ss Score
7.73
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTTGTATGTAAAGGTCGTCCAGTGAAGCTGGTGAGAATTTTTAATCCGTGGGGTTCTGGAGAGTGGAACAGAGACTGGAGCGACAG
Seq A exon
ATCTCCACTGTGGGAACTTGTACGTCCCGAGGACCAAAAATACAATGATGTTCTCGACAATGGAGAATTCTG
Seq C2 exon
GATGTCAATGGAGGATTTCTGCAGGAATTTTTCTGAAATGGATATCTGTTGTTCAGATGTGAATGTCCTTGCCGGATCTCAATCTTCCTCCTGGAAAACTGAAGTGCACAAGGGCCAGTGGGTGATGGGGACAACAGCTGGAGGGTGTTCAAATGACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008553-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.4=100)
A:
PF0064816=Peptidase_C2=FE(8.1=100)
C2:
PF0064816=Peptidase_C2=PD(6.4=34.5),PF0106717=Calpain_III=PU(15.7=43.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGAGACTGGAGCGACAG
R:
GAACACCCTCCAGCTGTTGTC
Band lengths:
171-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]