DreEX6053964 @ danRer10
Exon Skipping
Gene
ENSDARG00000089050 | cuzd1.1
Description
CUB and zona pellucida-like domains 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-131122-16]
Coordinates
chr17:21861372-21863605:-
Coord C1 exon
chr17:21863567-21863605
Coord A exon
chr17:21863109-21863168
Coord C2 exon
chr17:21861372-21861470
Length
60 bp
Sequences
Splice sites
3' ss Seq
TCTTTATTCTCTTTTCACAGCCT
3' ss Score
9.26
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
Exon sequences
Seq C1 exon
ACCATTGCGATATGATCACCGATTGGCCGGATACAACAG
Seq A exon
CCTACTGCTCAGCAACACCATACACAACAGCAGAACCAGACACTCACTGGCCATATACAG
Seq C2 exon
GTTTTCCCTCCTGCATGTATAATTGTGGATACAACTTCAGCAGCTGCTCGTGCAACTTGGACTGTCGGTATTACAACAACTGTTGCCCTGACTATCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089050-'4-7,'4-6,6-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0103312=Somatomedin_B=PD(15.0=42.9)
A:
PF0103312=Somatomedin_B=PD(15.0=28.6),PF0103312=Somatomedin_B=PU(0.1=0.0)
C2:
PF0103312=Somatomedin_B=PU(80.5=97.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGATATGATCACCGATTGGC
R:
GTGATAGTCAGGGCAACAGTTGT
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]