DreEX6069943 @ danRer10
Exon Skipping
Gene
ENSDARG00000009341 | nrap
Description
nebulin-related anchoring protein [Source:ZFIN;Acc:ZDB-GENE-060616-224]
Coordinates
chr12:30486011-30486861:+
Coord C1 exon
chr12:30486011-30486208
Coord A exon
chr12:30486511-30486615
Coord C2 exon
chr12:30486763-30486861
Length
105 bp
Sequences
Splice sites
3' ss Seq
ATATATACTATATACTACAGAAC
3' ss Score
4.12
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
GTTGCTTATAAAAAGGATTCTAAGGAAACTCAATCCAAGTGCCACCTGCCTCAGGACATGGTGAATCTGAGTCATGCTAAGAAGGCTCAAGCTCTGGCCAGTGATCTGGAATATAGGAAGAAGTTACATGATTATACTCTCCTGTCTGATGACATGAAAGTGCAGCAAGCTAAAAAAGCCTACAAACTGCAGAGTGAC
Seq A exon
AACCAGTACAGATCAGACCTGAACTGGATGAAAGGAGTTGGATGGGAGGCCGATGGATGCCTAGATGTAGAACAGGCCAAGAAAGCAGGAGAACTCTTCAGTGAG
Seq C2 exon
AAAAAGTATCGCCAGAAGGTGGATATGGTGAAGTTCACACAAGTGGCAGATACTCCTTCCATCATGCATGCCAAGAAGAGCCAGGAGCTGCAGAGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009341-'21-25,'21-24,22-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=WD(100=39.4),PF0088013=Nebulin=PU(55.2=24.2)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.6=42.9)
C2:
PF0088013=Nebulin=PD(37.0=30.3),PF0088013=Nebulin=PU(55.2=48.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAATCCAAGTGCCACCTG
R:
CTCCTGGCTCTTCTTGGCATG
Band lengths:
258-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]