DreEX6073951 @ danRer10
Exon Skipping
Gene
ENSDARG00000035823 | zmym4
Description
zinc finger, MYM-type 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5459]
Coordinates
chr19:40496526-40499683:+
Coord C1 exon
chr19:40496526-40496641
Coord A exon
chr19:40498612-40498815
Coord C2 exon
chr19:40499533-40499683
Length
204 bp
Sequences
Splice sites
3' ss Seq
ATTTCATTTTCTTTGTTTAGGAG
3' ss Score
8.95
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTGCTCCCGTGGAATGCAACAGCTGTAAGCAGAAGCTGGTGCCTCAGTACCATCTGGCCATGTCTGATTCAAGCATCCAGAACTTCTGCTCCTTTTCTTGTGTAGTGTCATATCAG
Seq A exon
GAGTCATTTGGTAAGAAACCAAACTACCAGGTGAACACTGTAACCTCTACGACGAATGCATCAACGCCAAAACCTGCCTCTTCAGAGTCCAGCTCCTCAACCAAGACAAGCACTTCCAAGAGTCAAGTTCAGAACGTCACAAAGATCCCCTGCTCACAGTGTCTCAACTCATTCTTCCACAAACCAGAACTGCTGGATTTTAAG
Seq C2 exon
AGGAAAATGTACGCTTTCTGCGGTACGGCTTGTGTTGAGGAGTTCAAGCAGATCAACAACGTCATGGCTCGCTGCGAATACTGCAAGATTGACAAAATTATCAAGGAGGTGAAAAGGATCAACAAAATTGACCGATCTTTCTGCAGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035823-'11-18,'11-17,12-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.371 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=92.3)
A:
PF064679=zf-FCS=PU(60.0=35.3)
C2:
PF064679=zf-FCS=PD(35.0=27.5),PF064679=zf-FCS=PU(85.0=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGGAATGCAACAGCTGTA
R:
CCTCACTGCAGAAAGATCGGT
Band lengths:
261-465
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]