DreEX6075823 @ danRer10
Exon Skipping
Gene
ENSDARG00000087717 | tmprss5
Description
transmembrane protease, serine 5 [Source:ZFIN;Acc:ZDB-GENE-131121-184]
Coordinates
chr15:18235602-18237528:-
Coord C1 exon
chr15:18237430-18237528
Coord A exon
chr15:18237215-18237328
Coord C2 exon
chr15:18235602-18235737
Length
114 bp
Sequences
Splice sites
3' ss Seq
CGTTTAATGTCTTTGTCTAGTGA
3' ss Score
6.41
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
TGTCTGGCAAAGTGTCATCTCGTAAACTAGTGAGAGTGTTTGCAGCTCTGTGTGTGCTGTGTCTGCTGGGAGGTGTTGTGGTTGGAGTTTGGTTCATAG
Seq A exon
TGAAATTTCTCTTAAAGCCAAACTTATCTCAGAGCCCTGCGAGCCTGGGAGACACTAAGGACACGTCCTTCTGCAATGTGACCGAGGACATCTCTGTGACAGATCCCAGGAAAG
Seq C2 exon
TGTTTTACAGGATCAGTGCTGAGAACTCACTTCTGGAGATCCAGCTGGAGAAGCTGCAGACGTGGCTGCCTGTTTGTTTCGAGAGGTGGAACTCGTCTCTGGGAACACTCGTATGTCGACAGCTGGGCTATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087717-'3-5,'3-2,4-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF154941=SRCR_2=PU(39.8=84.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGCAAAGTGTCATCTCGT
R:
CTCAGATAGCCCAGCTGTC
Band lengths:
234-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]