DreEX6080907 @ danRer10
Exon Skipping
Gene
ENSDARG00000056075 | rca2.1
Description
regulator of complement activation group 2 gene 1 [Source:ZFIN;Acc:ZDB-GENE-050320-60]
Coordinates
chr23:26167940-26174363:-
Coord C1 exon
chr23:26174315-26174363
Coord A exon
chr23:26173339-26173403
Coord C2 exon
chr23:26167940-26168897
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACTGGACTTTTGGATTGCAGGTC
3' ss Score
6.69
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTTTACTTTTACTTGGATGTTTTGGAGTTTATATGCTCGTTACGAAACA
Seq A exon
GTCAAAACGTAAACAAAAGGTGCCTACAAATGAAGAGGGATCGCTTTAATACCCTCACATTCGTG
Seq C2 exon
GTAAAGTTGCTGCCATGGGAGAAAAAACAAAAACAAATGAAGCCTATATGTTATACAAGCACTTTCAACAATCCTGCAAGAGACCGACTGATTTCACGCCGCAAATTCCTCCATCTTAAAGAGCTTCATTTGTACATCATACTAATGTCTGATAGTTACTAAGTTTGCCCAATTCTGCATTCGCTTGAAGAAATATGGCTTCAGATTAGTCAGGTTGATTTCACTTTTATAAAGTGTTTGCTTCTCTTTTCTAACTTTTAACTTAATTTGATGTTAAACACTGAGCTTGCAGTGATCACTTATTAAGACAGTCCATTCTTCATACCGAGAACAGCTGAAGATGCACTGATATGATTTCGTTGAGGGTTGTAGTTAACGTAAATATGTTAAAAAGCCTGATTAAATTGTGGATTAAAAAAAGGATGTTTTATATTTTGTTGTGTTAGTCTCAATTACAGGCTTCCAGACTAATGAAGAATTGAGTTTTCTGCATTAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056075-'15-21,'15-18,16-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.750 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACTTTTACTTGGATGTTTTGGAGT
R:
TTTAAGATGGAGGAATTTGCGGC
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]