DreEX6082550 @ danRer10
Exon Skipping
Gene
ENSDARG00000053966 | cyp17a2
Description
cytochrome P450, family 17, subfamily A, polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-100822-1]
Coordinates
chr23:45831824-45862659:-
Coord C1 exon
chr23:45862584-45862659
Coord A exon
chr23:45833436-45833560
Coord C2 exon
chr23:45831824-45831955
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCCTCCTGCTGTTAGTCA
3' ss Score
5.71
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
TCAGCTGGAGAAGCCATTTGAAAGTTGTTTGCAGGCTGTTTTTGGAACTAACGGATGTAAATATCCTTCTGAACAG
Seq A exon
TCAGGCGTCTGCTGGAGGGTGTGGGCTCCTCCAGTGTGTCGTTCCCGTGTCTGCCGCGCCTGCCGCTGTTGGGGAGTTTACTGCATCTGCGCTCCAATCTCCCGCCACACCTGCTCTTCACTCAG
Seq C2 exon
CTGTCGTCTCAGTACGGGCCGCTGTTTGGGCTTTATGCCGGGCCGCACCTCACGCTGGTGGTCAGTGAGATCGGTCTGGTCAGAGAAGTGCTGCTGCAGCGGGGCAGAGAGTTCGCCGGACGGCCCAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053966-'1-5,'1-3,2-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=PU(5.9=43.5)
C2:
PF0006717=p450=FE(9.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCAGAGGTCAGTTTCAG
R:
CCGTCCGGCGAACTCTCT
Band lengths:
223-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]