DreEX6087120 @ danRer10
Exon Skipping
Gene
ENSDARG00000098967 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr10:8737685-8740389:-
Coord C1 exon
chr10:8740315-8740389
Coord A exon
chr10:8739165-8739290
Coord C2 exon
chr10:8737685-8737828
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTTGTTCATGTGCAGATG
3' ss Score
10.09
5' ss Seq
CAGGTTACA
5' ss Score
-1.25
Exon sequences
Seq C1 exon
GCGTATTCTGTTTATGATGAAGAAATCGGTTACTGTCAAGGGCAGTCCTTTCTTGCTGCTGTGCTGCTATTACAC
Seq A exon
ATGCCAGAAGAGCAGGCGTTCAGCGTGCTGGTCAAGATCATGTTTGAATACGGTCTCAGGGAGCTCTTTAAGCAGAACTTTGAAGACCTGCACTGCAAGTTCTTCCAGCTGGAGAGACTCATGCAG
Seq C2 exon
GAATGCATTCCAGACCTGTACACACACTTCCTGAACTTGGGTTTGGAGGCGCACATGTACGCCTCCCAGTGGTTCCTCACACTCTTCACAGCCAAATTCCCTCTTTACATGGTCTTTCACATCATAGATCTTCTGCTGTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098967-'15-18,'15-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.8=100)
A:
PF0056613=RabGAP-TBC=FE(20.1=100)
C2:
PF0056613=RabGAP-TBC=FE(23.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTTTATGATGAAGAAATCGGTT
R:
CACACAGCAGAAGATCTATGATGTGA
Band lengths:
211-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]