DreEX6089426 @ danRer10
Exon Skipping
Gene
ENSDARG00000098686 | tmprss2
Description
transmembrane protease, serine 2 [Source:ZFIN;Acc:ZDB-GENE-041212-48]
Coordinates
chr10:38764620-38771686:+
Coord C1 exon
chr10:38764620-38764709
Coord A exon
chr10:38768874-38769150
Coord C2 exon
chr10:38771594-38771686
Length
277 bp
Sequences
Splice sites
3' ss Seq
TTGATTTTATTTATTTTCAGACC
3' ss Score
8.91
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
CTGTGTGTTCAGTCAGCAGGTCATAGTTTGAGTTTCGACTGACAAAACTTCACACGAAACCAAAGGATAAAGATGAACAGAACTGAAACG
Seq A exon
ACCTACGACAATGTCTCTCACGTGAACTACGGTTTCCATGATGAGGAGCAGCGGCCGCCTCCATATGCACCGTCTTCTGGAGTAAACCCGGCTTTATCTCAGTACCCCGCCCCTCCAAACACACAGCATCTGCCCCAAAATCCCCATGTGCTTTACCCTTCACAGAAATACTCACCTGCGCACAGCCTGCCTCACTACACACCTCAACCAGCACTTATTAACACTCACCATACAGTCACACCTACAATCTACCTGGACACCAATCCAGTCCACAAAG
Seq C2 exon
TTTCCAGGAGAAAAAAATGGCCATATATTGTGGGCACAGTCGTCACACTGCTGGTCATTGCTGGAGTCGTAGTTGCGGTGCTTTGGTTTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098686-'1-2,'1-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.516 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTGTTCAGTCAGCAGGT
R:
AAAACCAAAGCACCGCAACTAC
Band lengths:
180-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]