DreEX6090029 @ danRer10
Exon Skipping
Gene
ENSDARG00000074906 | znf831
Description
zinc finger protein 831 [Source:ZFIN;Acc:ZDB-GENE-081022-210]
Coordinates
chr11:386515-400027:-
Coord C1 exon
chr11:399567-400027
Coord A exon
chr11:394620-398554
Coord C2 exon
chr11:386515-386702
Length
3935 bp
Sequences
Splice sites
3' ss Seq
AAAACTGTTTCTTTTTTTAGGTA
3' ss Score
11.04
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCACTCTGTAGTTCTGTCTCACTTTCTCTCTCTCTCCCTCCCTCCACTTGCTCTCCTATCTGTGTCCATCTCCCTTAGTCTTTTTCTCTGGATCTCCATTTTGCAGCTTGATCTTCTCTCAGGTTTGGGTTCCTTCAGTGCTAGCACGCCGAACTTTGTTTTTAAATGATTTTCTCTGTCACTCCTCTCTTCCTCTTTCACTCTCTCATCTACTTTTTGACATTGTCGCCGTCATCCAGTCACATTTGCATGAATGACGTTTGTATTTCCTCCATCAGCAGCAGAAGCGGCTGTAAGAAAACTAAAGAGGGAAGAGGAACCGAGGGCCTTTGTGGTGAGAGAGAGAGTGCCACGGTCACATGTTCTCTTGGCATTTCACATCAAGGTGGATTTTGGACTTGTTTGGAGGTAATTGGGTGACTTTTAGCCACGGCAGTGTGACCTTTGAGATCCAGTCTCTG
Seq A exon
GTAATTAGCGAGCTCCGTCTCCCAGCATCACAAGGGTTGTGTTACCATGGCAACTAGAAAGCAGAGCTTTGTGCGAGCTACCGAGCCTCAGTGTTCAGAGTCTGCACAGAGAGAGGAAGAGGCGCATGTTCAGGCCCGTCTCACCACTATGTATGTCCAGAACGTTCCTGCTTCTGGCCTGCAGCCATACCCTCAGGCCCAACCTGGAGCCTTGCAGGACGCAACGGTTGTACCACTGTTCCTGCCCCGGATGTGTAGCAACTCGACTTTGCCCTCATTGACATTGCATATTGCCAGCACGGCTGCTTTGCAGCAACAAAGACTAGTGGCTCCAGCGTCCGCGGGCAGACCTAAGTCTCTTGGGAAGCATGTTTGCCCACATTGCGGGAAGGACTGCCTGAAGCCCAGCGTGCTGGAGAAACATCTTCGCTGCCACACAGGAGAGCGACCGTATCCCTGCACGACCTGTGGCATTTCTTTCAAGACACAGAGCAATCTTTACAAACACAAGCGCACCCAGGCTCATGCCCGTCATTCCAGCGAGTCTGAAAAAGGCACCTTCAGCAGTCAGGAGAGCATGGAGAGCTCGAAGGACAACTGTTTAAGTCCATCCTTAGAGACGAACTGTGTGGATCAAGCCGGTGCGAGGAAAGCCAAAGAAGTTTTTCCTACAGATTCAATAACTACACCAAGTCAGACAGACCCTGCAGAGACTAGGATGATGTCTGGCATAGAATGGGCATTACAGAATGCTGCCATGGTCGGAATCAGCACAACGCCAGCACTTCAAGACAAGGTAAAGTCATTGAGAAAAACTGCGGAGTTTTCCGTTGATGCTATCAAACTAACGAATGCAAATGCTATCCAGCAGACAAGCGCACTGACTGTGGATGGATGCACACCGCTATCTTTAAACCGCATGCCTCTACAGAGGCAGGAGGCTTTATTTTCCAAACCATCCTTTCCATTCCTATCTAGCCATTGCAAAGCACAAAGCCATGACAGTACAGACTCTGGTTTCAGCGACAGCAGCGAGCATCATTCAACCAGCAGTCCTGGAGCAAGCCTGCACGATCCCAGTACAGAATCGCTGACAGAAACCCCAATGGCACAGCAAGAACCAGCTGCCTCCCAAATCCCCCCAGAGATGACCTCCGAAGACCCAAAAAGCAAGGTGTCCGTTCAGGAGAAGCAGAAGCTGGAGGAGCGCATTTCAAAACTTATATATGAGAATAGTGTGTTGGTGGACAATAAGCTACTGGAAAACGTGCGACCAAGAAAGACAATATTGTCAAAGCAAGGAAGCATTGATCTTCCGGTGCCCTACACGTATAAAGACTCCTTTCATTTTGAGATAAGGAACTGCAAGCACGTCTTGAGCTCCCAAAATCCAGACCGAGGAGGTCAAGCCGTTCACAGGTCTTTGCCCACACAACTGTCCGCCAGTCTGGAGCACGCACCATTAACACGCAGCAGCTCTCTACCCTTCTCTATGGGAAGCAAACCAGCTGCCGATGGAGCAGTGAGTCTAAATCTCAGCAGACGATGCAGTGCAGGCCATGTTTACCCAATACGGCCATCAAATCAGAGGGCAGCAACACACCGCTCACTAGTCAGACAGGTGGCAGTGGATTGCCTGTATAGTGCCGAGGCAGAAAGAGGCAGCATGAGCAGCCTGAGCTCAGACGGAGACAGCACCGATGTCGCAACGGAGTCATGTGTGAAAGCAACCTACAGGAAGAAAGCACAGAAGTTCGACTACACAAAGTGGCACACCTACAAAGGAGGCACATTTAGGAAACTCTACAATACTCCGAAAGACTGTGCACTAAAGGCGAGGAAGACTGCGTCAAGCACTGAACCGACAGAGAGTCTGGACATCCAGAGACATAATGGATCAATGTTGACCTTGCCAAATGAGCTTAAAGTCTCACATACTGGCTTTGAACATGATAACGTGAAGGGATCAAGCGTGGAAGATATACAATTAACACAACACACCGTCTGCCATGTCCCATCAGAGCGGAAGAAACAGCGCACTGGGAATGATGTTCAAACGCTCAGTGTTTCAGATCCTAAAGATACTGGAAATCTGTGTACGTTAATGAGCCAGTCATTCTTGTCAAGTTGTGCAGAGAGCGGCTCCATCACTGTACACAGTGTCAACATGCAGAATGTCCACTCTCAGAGCAACTTCATACAGACAAGTCAGTTCCTGGAGAATAATTCCCTTAGTGGTGGTGCTTCTTGTTTGGTGAGTATGAGCGGGGCATCTGGCACCCCGTCTGGTTCACTCAGCAGCCCTACTGTGCCTGAAGCCAAGACCAGCTTTCCTCCCATGTACCAGCTGAAGATTCCTTGTCCCGCAGATGGAGTGTCAGCGTCGTGTTCTGGCTCCACTTCAGCACATTGCTCAACCGCAGAAAGTCACCAAACTACAGAGCAGCCTGAACTATCCTCAAAACAGCACGCAGGATTTCACCAGAGTCAACAGGAGGCAATGTGCGTGGCAGCCTCCAAGGGGCTGAATCAAACAGACACTCTATCCAAAGTCATGTCAGAGATTCAGTCCACCACGAACACATCAGCTTCACTTGTTTCCGCTATGCCGCCTCCATTGGTGCAGCATCAAGTGTCTTTGTTGCAGAATAACCGAGGTGAGGAGGAGAATCAGTCAACTGCTGCAGTATATCAGCCTGCTAAAACATTGGAGAGCTCTCGCTTCACCACACCAACCATGTCAACAATGAGTTACTGCTCTGGACCAACAGTATATTCTCCGGTAACTACAGTACAGAATCATCCTTCATTCTCTGTTATTGAATCAGGAGAACCCAATGCTTGTACAGACAACATCGCATCCACAGTGTGTGAGAGTCCTCAGAACAGCATGGCATCTAATATCCCCACGAGTGACTCAGAAGAGCTTCAGTCTGAAGGAAAAGTGATGCTGCTGAATGGCTCGGCTCAGGCTCAGAACACGTTCTATGTGCGCACGGCTGACCTCCAGATTGTCATGCAGCTCATTTCTGATGAACAGTTAGCACTGATCGAGCCTCATATTGAAGCCATGTCTTCAGCGCAGACGACACTGTTGCAGGAGGCGTACAGCAAAGATGTGCCGCAGGAACTCATCAATATTGGTGAGACGCAAATAAATAGCACTTTCAGGTGTTCAGCAAACAAAGCAGACACCTCTCAAAATGATGTTACCACCATGCCTCAGTGTGTCTCATCTTGGTCGCATCCACAGACAAAGTTTCACATCTCGGCCTCAGCGGACTATCGTAAAAACACAACACAACCGCTGGAGTTACCAGAGCTGATGAACTCTGGAAGTCTTGAGGTTGAGTCAAGTCACAAACTAGTGGATGGAGACACTCTGACTGAGCCTAAATCAGTGGAGAGCAGTTGTTCTATAAGAAAATACGACAAGGAACCACAAAACTGTGTTCACAACAAAAACACAGTAAGCACTACTGAGGATCAAACATTCACAGAGGCAACCAGAGATCAACAAGTGGAATCAAATCACATTCCAACTATAAACACGAGTGAGCTAAAGGAAACAGGTCACTTCATGTCAGAGAGCGTTCACACAAACACAACTACACACCTCGCAACTTGTGTTTGTGAGAAAAAGACGACAAAAGAGATGCCAGAACAGCCCAGAGACAGCAAGACTAGCTTAGACACGAGAGAAATAAAGGCTTGTGACACAGATAAGGTGACTGAAACGTTGTGTCCTGAACAAACAGCTGCTCAGCAGGATTCCCAGCACGACTTTGCTCCCGGTGATTTTGGAAATCACACTTATAGTGATGTGAAATCATCCTGCCCGACGCCAGACAGGACATCTAGCCGTAACACTGTTAATGGAGACAGAAGTAAGCGAGATGTCCACACACAGCACGCCCATCTGGAGGTGTCTACAG
Seq C2 exon
AATCTGGGGAAGATGGTGTTAGGAAAAACCTGAGGTTTCAGAGGGACTCAAGGACAGATAGAAGGGAATCAGGAGCCAAAATACGGGAAGATGGAGATGAAGAGGGGAAAAGATCAACCATGGAGATGACTGATGGAAACAACACATGCCGAAGCTCTGGAGACACTTACAAACAAGACAAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074906-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.571 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
PF134651=zf-H2C2_2=WD(100=2.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]