DreEX6090803 @ danRer10
Exon Skipping
Gene
ENSDARG00000063133 | slc4a10a
Description
solute carrier family 4, sodium bicarbonate transporter, member 10a [Source:ZFIN;Acc:ZDB-GENE-100215-3]
Coordinates
chr11:10710034-10711639:-
Coord C1 exon
chr11:10711478-10711639
Coord A exon
chr11:10710285-10710398
Coord C2 exon
chr11:10710034-10710195
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTTATTTTGCAACAGGTG
3' ss Score
9.86
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GGCTGTGTGGAGAACAGGGGTGAATTTGTGGGCAGTGCGTGTGGTCATCACGGTCCTTACATCCCTGACGTCCTCTTCTGGTCTGTCGTTCTCTTCTTCTCCACAGTGGCCATGTCTTCTTTCCTCAAGGAGTTCAAAACCAGCCGCTACTTTCCCACCAAG
Seq A exon
GTGAGGCAGATTATCAGTGATTTTGCTGTTTTCATCACCATCATGACCATGGTTCTGATCGACTATGGTCTGGGGGTTCCTTCACCCAAACTACAGGTTCCTAATGTGTTCAAA
Seq C2 exon
CCAACCAGAGATGACCGTGGCTGGATTATCAGTCCACTGGGACCAAACCCGTGGTGGACTGTAATTGTGACCTGCATCCCAGCCCTGCTGTGTACTATCCTCATCTTCATGGACCAACAGATTACTGCCGTTATTATTAACAGGAAGGAACACAAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063133-'25-26,'25-25,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.3=100)
A:
PF0095516=HCO3_cotransp=FE(7.2=100)
C2:
PF0095516=HCO3_cotransp=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGGAGAACAGGGGTGAA
R:
GCTGGGATGCAGGTCACAATT
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]