DreEX6090829 @ danRer10
Exon Skipping
Gene
ENSDARG00000077474 | PLA2R1
Description
phospholipase A2 receptor 1, 180kDa [Source:HGNC Symbol;Acc:HGNC:9042]
Coordinates
chr11:11085802-11091577:+
Coord C1 exon
chr11:11085802-11085886
Coord A exon
chr11:11091302-11091434
Coord C2 exon
chr11:11091542-11091577
Length
133 bp
Sequences
Splice sites
3' ss Seq
TTATTCATGCCATCCTGCAGGTG
3' ss Score
9.19
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
TACAGAGGGTCGCTGGTTTTGGGTGGGCTTTACTAAGAGAAACCCTTCTTCTGATGGAGCCTGGGAGTGGTCAGATGGCACACCG
Seq A exon
GTGGTGACATCGTTCATTGAGGATATGAATGAAGCAGACTCTCACATGTGTGCTGCGTACAGTGACCTCACAAACACTCTCACTCCTCACTCCTGTGACTCCAAATATGAATGGATTTGCAAAGTGCCTCGAG
Seq C2 exon
GTGTGGAGCTGGTCAAGCCATACTGGTACAGCGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077474-'17-16,'17-15,18-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(25.2=100)
A:
PF0005916=Lectin_C=PD(36.9=91.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGAGGGTCGCTGGTTTTG
R:
CGCTGTACCAGTATGGCTTGA
Band lengths:
118-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]