DreEX6093195 @ danRer10
Exon Skipping
Gene
ENSDARG00000074808 | MEGF6 (1 of 2)
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr11:41147549-41149230:-
Coord C1 exon
chr11:41149108-41149230
Coord A exon
chr11:41148264-41148401
Coord C2 exon
chr11:41147549-41147671
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTTTTTGTGGTTCAGGTA
3' ss Score
9.19
5' ss Seq
TCGGTACAG
5' ss Score
3.7
Exon sequences
Seq C1 exon
ACATTGATGAGTGTGCGTTGGGTCAGACGGACTGTGCTCATGGCTGTCGTAACACCAGAGGATCCTTCATGTGTGTGTGTTCTGCTGCCTATGAGCTCGGGGTGGACGGTAAACAGTGCTATC
Seq A exon
GTATTGAGATGGAGATCGTGAACAGCTGTGATCATGATAATGGTGGTTGTTCTCATCACTGTGAACATTCGACCGCTGGTCCGCTGTGCAGCTGTAATGAAGGATATCAGCTGGACCACGACCACAAGACCTGCGTCG
Seq C2 exon
ATATAAACGAGTGTGTCGACGGCAGCTCGTGTTGTGAACATGACTGTACGAACTATCCTGGAGGATACGAGTGTTACTGTACAGCCGGATATCGACTGAACACTGACGGATGCAGCTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074808-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
PF126622=cEGF=PU(81.8=38.3)
C2:
PF126622=cEGF=PD(13.6=7.1),PF126622=cEGF=PU(83.3=47.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGAGTGTGCGTTGGGTC
R:
CATCACAGCTGCATCCGTCAG
Band lengths:
243-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]