DreEX6096483 @ danRer10
Exon Skipping
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39612705-39616259:+
Coord C1 exon
chr24:39612705-39612821
Coord A exon
chr24:39613823-39613980
Coord C2 exon
chr24:39616092-39616259
Length
158 bp
Sequences
Splice sites
3' ss Seq
CTCGTGTGTGTTTCCTGTAGGAG
3' ss Score
10.34
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GTTGGAATATCCCATACGAGTTTAACGAGTCTGACCTGAGAATCAGCATCCGTCAGATCCAGATGTTCCTGGATGAGTATGAGGAGGTCCCACTGGAGGCTCTTACCTACCTGACAG
Seq A exon
GAGAGTGTAATTATGGTGGGAGGGTGACTGACGATAAGGACCGGAGACTGCTGATGTCTCTCCTCTCCATCTTCTACAGCTGGCAGCTCATTCAGCAGGACCAGTATCGTGTGTGTGAGGGAGATCTGTATTATGTGCCTTCACATGCTCCTTACCAG
Seq C2 exon
AGCTATGTGGACTACATCCGCAACCTGCCTATCAGTGCTGAGCCTGAGGTCTTCGGCCTGCACAGCAATGCTAATATCACCAAAGACAACCAGGAAACCAACCAGCTGTTAGACGGAGTGCTGCTAACTCTACCAAGACAAACCAACAGCGGAGCCAAATCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468-'50-52,'50-50,51-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.125
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.5=100)
A:
PF0302810=Dynein_heavy=FE(7.3=100)
C2:
PF0302810=Dynein_heavy=FE(7.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGAATCAGCATCCGTCA
R:
ATTTGGCTCCGCTGTTGGTTT
Band lengths:
243-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]