DreEX6096486 @ danRer10
Exon Skipping
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39604035-39607121:+
Coord C1 exon
chr24:39604035-39604233
Coord A exon
chr24:39604347-39606488
Coord C2 exon
chr24:39606896-39607121
Length
2142 bp
Sequences
Splice sites
3' ss Seq
TATTTGTTTTATTTACGTAGGAA
3' ss Score
7.13
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GATGAGTGTGAGGGGGATCTTGCGGAGGCAATGCCAGCACTGGAAGCAGCTCTGGCGGCTCTGGACACACTGAAGCCAGCTGATATTACTGTCCTGAAGACCATGCAGAATCCTCCTGGTCCTGTCAAACTGGTCATGGAGTCCATCTGTGTCATGAAGGGCATTAAACCAGAAAGGAAACAAGACCCTGGTGGATCAG
Seq A exon
GAAAGATGATTGAAGACTTCTGGGGACCATCTAAGAAGATTCTAGGTGACATGAAGTTCCTCGAGAGCCTTAAAACATTCAACAAGGACAACATACCTCCTGCTAGCATCAAGAAAATCAGAGAAAAGTTCATAGATCACCCTGATTTTCAGCCTTCAGTAATCAAAAGCGTGTCTTCTGCTTGTGAGGGCCTTTGCAAATGGGTGCGTGCCATGGAAGTGTACGAGCGTGTGGCCAAAGTTGTCGCCCCGAAGAAAGAGAAACTGAAAGAAGCAGAGGAAGAGTTAGCCGTGCAGATGCAGAAGTTGAATGTGAAACGTGCCGAGCTGAAGGAGGTGGAGGACCGTCTGCAGGCACTCAATGACACATTCGAAGGGATGATACAGAAGAAGAAAGACCTAGAGGCAAACATCGAGCTCTGTTCGCAGAAACTTGTACGAGCTGAAAAACTAATCGGTGGTCTGGGAGGAGAAAAAGACCGGTGGACAGAGGCCGCTCGGCTCCTCGGCATCAAATATAACAATCTGACCGGTGATGTGCTTTTGTCTTCGGCCACAGTCTCATATCTCGGAGCTTTCACTGTTGATTATCGTGTCGAGTGTCAGCAACAGTGGCTCGAGCTGTGCAACAGGAAGAAGATCCCGTATTCAGAAGACTTCACACTTGGCAACACTCTCGGAAATCAGGTACTGATCCGATCATGGCAGATCGCTGGATTACCCGTGGACTTGTTTTCCACAGATAATGGAATCATTGTGTCTAACTCTCGCCGTTGGCCACTTATGATTGACCCTCAGGGCCAAGCTAACAAGTGGATCAAAAACATGAACAAGGCTAATAAACTGTCTGTCATCAAGCTCTCAGACAGCAACTACGTCCGTTCCCTTGAGAACGCCATCCAGTTTGGCACGCCTGTACTCCTGGAGAACGTCGGTGAGGAGCTGGACGCGGTATTAGAGCCGGTTCTCTTAAAACAGACCTTTAAGCAGCAGGGCGTGGAGTACATGAAACTGGGCGAGAACACCATTGAGTATTCAAGAGATTTCCGGTTCTACATAACTACAGGACTGAGGAATCCACATTACTTGCCAGAGGTGGCAGTGAAAGTTTGTCTTTTGAACTTCATGATCACCCCATTGGGTCTCGAAGATCAGCTTCTAGGGATCGTCGCAACCAAAGAGAAACCAGAACTTGAGGAGAAGAAAAATCAGCTGATTCTGGAAAGCGCAGCCAATAATAAGCAGCTAAAGGAGATTGAGAACCAAATCCTGCAGGTTCTCTCTTCTTCAGAAGGAAACATCCTAGAGGACGAGACCGCCATTACGGTTCTGTCTTCATCTAAGCTGCTGTCAGAAGAGATCTCGGAGAAGCAGAAGATCGCAAGCGTGACAGAGAGCGAGATCGATGAAACTCGCATGGGTTACCGGCCTGTTGCTGAACACTCGTCCATTCTCTTCTTCTGCATCTCAGATTTGGCAAACATTGATCCCATGTACCAGTACTCTCTGACGTGGTTCATCAACCTGTACCTGCAGTCCATTGCTCACAGTGTGCCCAGCGATGACCTGCAGATCCGCATAGCCAACATTTTAGATCACTTCACTCTGAGGGTTTACTATAATGTGTGTCGATCCTTGTTTGAGAAGGACAAGCTGCTGTTCTCTTTGCTGTTGACTGTAGGCATCATGCAGGGCAAAGGTCAGGTGGACGACATCGTCTGGCGTTTCCTCCTCACAGGAGGTGTTGCACTAGAAAACCCACACCCCAACCCAGCTCCAGAGTGGCTTTCAGACAAATCTTGGTCTGAAGTGGTGCGGGCTTCCCAACTTTCCCGCCTTGAAGGATTATTTGAGCATGTGCAGGAGAACATTGCACTGTGGAAGCAGATTTATGACTCTGGCCATCCACAGGACGAGGAGTTACCTGGAAAGTGGCATACAGTCGTGGGCATGGAGCGCATGGTGGTCCTGCGTTGCTTCAGACCAGATAAACTGGTGCCAGCAGTACAGAAGTTCATTGTGGACAACATCGGTCGAGCATACATCGAGCCACCGACCTTTGACTTGGCGGAGAGCTACAGCGACTCCAACTGCTGTTCGCCACTCATCTTCGTCCTCTCTCCAGGATCAGACCCCACGGCAG
Seq C2 exon
GACTACTGAAGTTTGCGGATGATTTGGGTATGGGCGGCAGTAGGACCCAGACAATCTCTCTGGGTCAGGGTCAAGGGCCTGTAGCTGAGCAGCTGATCAAGGCCGCACTGAGCGTCGGCCACTGGGTGGTGCTGCAGAACTGCCACCTCGCAACCAGCTGGATGCCAACCTTAGAGAAGATCTGTGAGGAGGTCATCACACCTGAAAACACACACACCAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468-'45-47,'45-46,46-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.007 C2=0.079
Domain overlap (PFAM):
C1:
PF127772=MT=FE(18.8=100)
A:
PF127772=MT=PD(59.1=29.1),PF083176=Spc7=WD(100=22.2),PF127812=AAA_9=WD(100=32.2),PF0302810=Dynein_heavy=PU(18.4=18.3)
C2:
PF0302810=Dynein_heavy=FE(10.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]