DreEX6097164 @ danRer10
Exon Skipping
Gene
ENSDARG00000098237 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr22:4103258-4104127:-
Coord C1 exon
chr22:4104005-4104127
Coord A exon
chr22:4103726-4103851
Coord C2 exon
chr22:4103258-4103380
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTTGTGTGTGTGTAGACA
3' ss Score
8.29
5' ss Seq
AGGGTACAC
5' ss Score
2.83
Exon sequences
Seq C1 exon
ATGTTGACGAGTGTGTGACAGAGGAGCACAACTGTAACCCGAACGCTGAGTGTTTGAACACACCAGGCTCGTACCGCTGCTCCTGTAAAGAAGGATTCAATGGAGATGGATTCTCCTGCTCTG
Seq A exon
ACATGGACGAGTGTGCGGATAATGTGAATCTGTGTGAGAACGGTCAGTGTTTAAACGCTCCGGGTGGATACCGCTGCGAGTGTGAGATGGGCTTCACTCCAACAGAGGACAGCAAAGCCTGCCAGG
Seq C2 exon
ACATTGACGAGTGCAACTTCCAGAACATCTGTGTGTTTGGATCGTGTCAGAATCTGCCAGGAATGTTCCGCTGTGTGTGTGATTATGGATATGAGCTGGACCGCAGCGGAGGAAACTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098237-'16-15,'16-14,17-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGAGTGTGTGACAGAGGA
R:
CTGTGCAGTTTCCTCCGCTG
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]