DreEX6101064 @ danRer10
Exon Skipping
Gene
ENSDARG00000070331 | muc5.1
Description
mucin 5.1, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120822-1]
Coordinates
chr25:8314687-8315197:+
Coord C1 exon
chr25:8314687-8314817
Coord A exon
chr25:8314909-8314940
Coord C2 exon
chr25:8315050-8315197
Length
32 bp
Sequences
Splice sites
3' ss Seq
TTTTCATTCTTTCCTTGTAGACT
3' ss Score
11.38
5' ss Seq
GAGGTACTT
5' ss Score
7.82
Exon sequences
Seq C1 exon
GTACAACGACTTGTTTGTGGAGAAAGACTGTCAAGGCGAAAGCTGTCATCAAACATACATGGAAGGTTGTTTCTGTCCCGATAACACGTATCTAGTTAGTTCAACGACAGATTACTGTACGGCTTACTGCG
Seq A exon
ACTGCATCGGCCCTGATGGATTACCTCGAGAG
Seq C2 exon
CCTGGAGACACCTGGACCATGGACTGTTACAAATACACCTGCTCCAATGAGACTTTTGGGATCACCAAGGAATTTGTTGGGTGTCCGACTATAGTGCCCTGTGGACCCGAGCAAAAATTAATTATTGACAACTGCTGTCCAACCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070331-'45-48,'45-47,46-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGGTTGTTTCTGTCCCG
R:
AAGTCTCATTGGAGCAGGTGT
Band lengths:
127-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]