DreEX6101132 @ danRer10
Exon Skipping
Gene
ENSDARG00000058556 | muc5.2
Description
mucin 5.2 [Source:ZFIN;Acc:ZDB-GENE-121108-1]
Coordinates
chr25:8335314-8338664:+
Coord C1 exon
chr25:8335314-8335425
Coord A exon
chr25:8336256-8336343
Coord C2 exon
chr25:8338585-8338664
Length
88 bp
Sequences
Splice sites
3' ss Seq
CATTTCATGATGTTCCCTAGATT
3' ss Score
6.61
5' ss Seq
GTGGTAAAT
5' ss Score
5.18
Exon sequences
Seq C1 exon
GGTGTCTGTTCCGATCAATCAGAAGGGAATTAAAATAGAAGGAAGCCCAACAAGTATTAAGATCTCCAGATATGGAATGACCATCTTTTGGGAAGAAGACAACTCTATAGCG
Seq A exon
ATTGAACTTGCGGAGAAATATAAAGGGCTGACATGTGGACTCTGCGGAAACTACAATGGCGACAAGGATGATGATATGCCTGAGAGTG
Seq C2 exon
GTCCAGCCACATGGAAGATCTCAACACCAACTGAATCCTGTGAAGACGTTATACTTCCACCCAAGGATCAGTGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058556-'4-7,'4-4,6-7=AN
Average complexity
A_S
Mappability confidence:
90%=100=83%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.134 C2=0.111
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(26.8=100)
A:
PF0009420=VWD=PD(19.4=93.3)
C2:
PF087426=C8=PU(2.7=7.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCGATCAATCAGAAGGGA
R:
TCACACTGATCCTTGGGTGGA
Band lengths:
182-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]