DreINT0000046 @ danRer10
Intron Retention
Gene
ENSDARG00000093199 | A2ML1 (12 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr15:21078201-21078538:-
Coord C1 exon
chr15:21078394-21078538
Coord A exon
chr15:21078312-21078393
Coord C2 exon
chr15:21078201-21078311
Length
82 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TCTGCGAAAATATCTTGCAGATC
3' ss Score
7.1
Exon sequences
Seq C1 exon
TTTTTTTTTTTTTGCAGATTTGTAAACTTTAACTTACAAGAAGCTTCGCAGAATTTGCCGAAATTCACTGGCGCCAGCTAAAGTTAATATTTTAAACGGAACGTTTCTGTTGGAATTAGAGGCAGTCGGACTGCTGCACTTGACT
Seq A exon
GTAAGTTGCCTAACTACTGTAGATATGGTTGCCTAATGCCTAGGCTAACTTAAAATTTTCAGTCTGCGAAAATATCTTGCAG
Seq C2 exon
ATCGCGAGTGTCTGCCTCGTCTCTCGTCATGACTGGCAACAAGTTCTGTGTTTGGAAAGGGCTCATTTTAGCCATTATTCTGCTCTCGGTTAATGGACAAATGTCAACTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093199:ENSDART00000154019:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGCCGAAATTCACTGGCG
R:
ACCGAGAGCAGAATAATGGCT
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]